Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0854 ATGGGTGTCTGTTTTTCTTCCGCCGGCGACCACCGATCCCCTCAAGGTTCAGCGCGTGGGAGTAGGGACTTGACAGTATCCTTGGGGAGCGTGGAAGGAAAGCGTGAAGTTTCGGAGGAGTCTGGGGTTGTCGGAAGCAGCAGTGGTTGGAGTAACAGCAACAACAGCAACAGTGACACTAACAGTAATAGCATTGTTTATCCGAGTTTGGAAACGAGGAAGTTGAAGGAGTTTAGTTTCGCGGAGCTGAAAGCAGCTACGAAGGGTTTCAAGTCAGATGCGTTGCTTGGAGAAGGAGGTTTTGGGAAAGTTTACAAAGGATGGTTGCATGAGAAAACTCTGACACCAACCAAAGCTGGTTCTGGAATCATGGTAGCTATCAAAAAGTTGAATCCCGAAAGTATGCAGGGCCTTCAGGAGTGGCAGTCAGAAATCACGTTTTTGGGAACAGTTTCTCACCCAAACCTGGTGAAGCTTTTGGGTTACTGCTGTGACGATGTGGAGTTTCTCCTTGTGTACGAATTCATGCCAAAGGGAAGCTTGGAGACTCATCTATTTTGGAGAAATAATAACACAGAACCTTTGTCTTGGGACACTCGACTGAAAATAGCTATTGGTGCAGCTCGGGGTTTGGCTTACTTGCACACCTCAGATAAGCAAATCATATACAGAGATTTCAAAGCCTCCAATATATTACTTGATGAGGAGTTCAACGCGAAAATATCAGATTTTGGTTTGGCAAAACTAGGCCCTTCTGCGGGAGATTCACACGTGACAACGAGAATCATAGGAACATATGGTTATGCTGCTCCAGAATACATTGCAACAGGTCACCTATATGTGAAAAGTGATGTTTATGGATTTGGTGTGGTGCTGCTTGAAATGCTGAAAGGGATGAGAGCACTTGATCAAAAGCGGCCTTCAGGGCAGCAGAATCTGGTTGAATGGATTAAGCCTTATCTATCTGATAAAAGTAAGTTGAAAAGTGATATTATGGATGAGAAGATTGAAGGTCAGTATTCAACAAATGCAGCACTGAAAGCAGCACAGCTTACTCTAAAATGCCTTGAAACTGACCCTAAACTGCGTCCTTCTATGCAACAAGTTCTTCACACATTGGAAACCATCCAAGCTATCAAACTTAGAAGGAGGAAAAGAACCAAACATTGCTCTAAGTTCGCAACTATCAACAATTTCCAATAG 1203 0.4397 MGVCFSSAGDHRSPQGSARGSRDLTVSLGSVEGKREVSEESGVVGSSSGWSNSNNSNSDTNSNSIVYPSLETRKLKEFSFAELKAATKGFKSDALLGEGGFGKVYKGWLHEKTLTPTKAGSGIMVAIKKLNPESMQGLQEWQSEITFLGTVSHPNLVKLLGYCCDDVEFLLVYEFMPKGSLETHLFWRNNNTEPLSWDTRLKIAIGAARGLAYLHTSDKQIIYRDFKASNILLDEEFNAKISDFGLAKLGPSAGDSHVTTRIIGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLKGMRALDQKRPSGQQNLVEWIKPYLSDKSKLKSDIMDEKIEGQYSTNAALKAAQLTLKCLETDPKLRPSMQQVLHTLETIQAIKLRRRKRTKHCSKFATINNFQ* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0854 400 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 45 386 - -
Vra11g0854 400 PANTHER OS01G0588500 PROTEIN-RELATED 45 386 - -
Vra11g0854 400 MobiDBLite consensus disorder prediction 41 63 - -
Vra11g0854 400 MobiDBLite consensus disorder prediction 10 24 - -
Vra11g0854 400 Gene3D Transferase(Phosphotransferase) domain 1 176 397 - -
Vra11g0854 400 MobiDBLite consensus disorder prediction 1 63 - -
Vra11g0854 400 CDD STKc_IRAK 96 376 - -
Vra11g0854 400 ProSiteProfiles Protein kinase domain profile. 90 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0854 400 SUPERFAMILY Protein kinase-like (PK-like) 57 373 IPR011009 -
Vra11g0854 400 Pfam Protein tyrosine and serine/threonine kinase 93 373 IPR001245 GO:0004672|GO:0006468
Vra11g0854 400 ProSitePatterns Protein kinases ATP-binding region signature. 96 129 IPR017441 GO:0005524
Vra11g0854 400 Gene3D Phosphorylase Kinase; domain 1 74 175 - -
Vra11g0854 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0854 Vra-Chr11 7196453 7199196 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0854 52 373 Glycoside Hydrolase AT3G07070 47.059 2.24e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra11g0854 PK_Tyr_Ser-Thr 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0854 - - gmx:100778116 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0854 11 7196453 7199196 Vra7g0207 7 3098985 3101449 PCT