Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0846 ATGTCAATGGCAACTTCTCCTCACACCGCTCTCTTCCAAACCCGCACCACCCCTTTCCGCCTCTCCTCCCCTCGCTCCACCTCCTTCAAACCAGCATCAGTTAAATGCGCCACCCAGCTCCACACCCAACCCCCACCCCTCACCCACGCCCAAGATCGCGTCTTCAACTTCGCCGCCGGCCCTGCCACCCTCCCGGAAAAGGTCCTCCTCCGTGCCCAATCCGAGCTCTACAACTGGGGCGGATCCGGCATGAGCGTTTTGGAAATGAGCCACCGCGGCAAGGAGTTTCTCTCCATAATCCAAAAGGCCGAATCAGATCTCCGCACCCTCCTCCAGATCCCGCCGGAGTATTCCGTCCTCTTCCTCCAGGGCGGCGCCACAACCCAATTCGCAGCCTTGCCGCTCAACCTCTGCTCCCCTGACGACCCCGTCGACTACATCGTCACTGGCTCCTGGAGCGACAAGGCCGCCAAGGAGGCGCAGAAGTACTGCAAACCCAACGTGATCTGGTCTGGGAAATCCGAAAAGTACACAAAGGTTCCGTCTTTTGGCGATTTGCAGCAGAATCCGGGTTCTAGGTATTTGCATATTTGTGCCAATGAGACCATTCACGGGGTTGAGTACAAGGAGTACCCTGTTCCTCAGAGTGGTGTTTTGGTTGCTGATATGTCATCAAATTTCTGCTCCAAGCCTGTGGATGTGTCAAAGTTCGGTGTTATCTATGCCGGCGTCCAGAAGAATGTGGGGCCCTCTGGTGTGACCATTGTGATCATCAGGAAGGACCTCATTGGGAATGCTCAGGGTCTCACTCCTGTGATGCTTGATTTCAAGATCCACGATGATAACAATTCACTCTACAACACCCCTCCCTGTTACGGGATCTACATATGCGGGTTGGTGTTTGAGCATTTGTTGGAGCAAGGGGGGTTGGTGGAGGTTGAAAAGAATAATAAGAAGAAGGCTGAGATTCTGTACAGTACAATTGATGAGAGCAAAGGGTTCTATAAGTGCCCTGTTGAGAAGTCTGTGAGGTCATTGATGAACGTGCCATTCACTTTGGAGAAATCAGAGTTGGAGGGTGAGTTCGTCAAGGAGGCTGCTAAGGAGAAGATGGTTCAGCTGAAGGGACACAGGTCAGTGGGAGGAATAAGGGCTTCCATTTACAATGCCATGCCCTTGGCTGGGGTTGAGAAGTTGGTAGCTTTCATGAAGGATTTTCAGGCCAAGCATGCTTGA 1236 0.5283 MSMATSPHTALFQTRTTPFRLSSPRSTSFKPASVKCATQLHTQPPPLTHAQDRVFNFAAGPATLPEKVLLRAQSELYNWGGSGMSVLEMSHRGKEFLSIIQKAESDLRTLLQIPPEYSVLFLQGGATTQFAALPLNLCSPDDPVDYIVTGSWSDKAAKEAQKYCKPNVIWSGKSEKYTKVPSFGDLQQNPGSRYLHICANETIHGVEYKEYPVPQSGVLVADMSSNFCSKPVDVSKFGVIYAGVQKNVGPSGVTIVIIRKDLIGNAQGLTPVMLDFKIHDDNNSLYNTPPCYGIYICGLVFEHLLEQGGLVEVEKNNKKKAEILYSTIDESKGFYKCPVEKSVRSLMNVPFTLEKSELEGEFVKEAAKEKMVQLKGHRSVGGIRASIYNAMPLAGVEKLVAFMKDFQAKHA* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0846 411 PIRSF SerC 48 411 IPR022278 GO:0004648|GO:0006564
Vra11g0846 411 Pfam Aminotransferase class-V 54 399 IPR000192 -
Vra11g0846 411 PANTHER PHOSPHOSERINE AMINOTRANSFERASE 28 411 IPR022278 GO:0004648|GO:0006564
Vra11g0846 411 CDD PSAT_like 55 407 IPR022278 GO:0004648|GO:0006564
Vra11g0846 411 Hamap Phosphoserine aminotransferase [serC]. 52 410 IPR022278 GO:0004648|GO:0006564
Vra11g0846 411 TIGRFAM serC_1: phosphoserine transaminase 54 410 IPR022278 GO:0004648|GO:0006564
Vra11g0846 411 Gene3D - 67 306 IPR015421 GO:0003824
Vra11g0846 411 SUPERFAMILY PLP-dependent transferases 52 408 IPR015424 -
Vra11g0846 411 PANTHER PHOSPHOSERINE AMINOTRANSFERASE 1, CHLOROPLASTIC 28 411 - -
Vra11g0846 411 Gene3D Aspartate Aminotransferase, domain 1 307 411 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0846 Vra-Chr11 7090866 7092595 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0846 K00831 - gmx:100779355 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0846 11 7090866 7092595 Vra7g0310 7 4850159 4857222 PCT
Vra7g0197 7 2977449 2979018 Vra11g0846 11 7090866 7092595 PCT