Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0842 ATGGATAATGGAAATGAGAAGGATGAAAGGGAAACAGTTAAAGAGGGTGAAATGGTGAAGAAGATAACAATAACGTTAGTGTGTGGTAATGGGAAGGGTTCAAGAAGAGGGTCATCATCATCTTCTTCTAGTTTTTGTCAGGCAGATGAATGTGGTGTGAACTTGAACATGGCCAAGAGTTACAACCGCCGTCACAAGGTTTGTGACAGACATTCTAAGGCTCCTGTTGTTTTACTTTCTGGCATTCGTCAAAGGTTCTGCCAACAATGTAGCAAGTTCCATGAACTTGCAGAATTTGATGATACGAAAAGAAGTTGCAGGAAAACATTGGCTGAGCATAATGAACGAAGAAGAAAAAGTCGCACAGACATGTCCTTAGGAGACAAAGCTGCTCATGTTTCTAAATCTGATGATCTAGAATCCAAAATTTCAAATGAAGAGTACCAAGAATTTTTGAGGTACAAGTCTGGAAAATCTTCTAATCCTGGCCAATTCTCCTCCATGTCCAATGTGTCAACTGCCTGCATATCTCAATCTGTGGAAGGTCACAGTCCATAG 558 0.405 MDNGNEKDERETVKEGEMVKKITITLVCGNGKGSRRGSSSSSSSFCQADECGVNLNMAKSYNRRHKVCDRHSKAPVVLLSGIRQRFCQQCSKFHELAEFDDTKRSCRKTLAEHNERRRKSRTDMSLGDKAAHVSKSDDLESKISNEEYQEFLRYKSGKSSNPGQFSSMSNVSTACISQSVEGHSP* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0842 185 Pfam SBP domain 46 119 IPR004333 GO:0003677
Vra11g0842 185 PANTHER - 6 131 - -
Vra11g0842 185 Gene3D - 37 107 IPR036893 GO:0003677|GO:0005634
Vra11g0842 185 SUPERFAMILY SBT domain 45 124 IPR036893 GO:0003677|GO:0005634
Vra11g0842 185 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 6 131 IPR044817 GO:0003677
Vra11g0842 185 ProSiteProfiles Zinc finger SBP-type profile. 43 120 IPR004333 GO:0003677
Vra11g0842 185 MobiDBLite consensus disorder prediction 112 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0842 Vra-Chr11 7022181 7025420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0842 36 123 SBP-box Gene Family AT2G33810 60.227 5.02e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vra11g0842 SBP 3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0842 - - vra:106776693 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0842 11 7022181 7025420 Vra11g0842 11 7022181 7025420 ECH