Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0832 ATGGTCGAATCAGTTAAATTATCATCATCTACCCCACTTTCTTCTTCCGATGACAATACCTTTGATGATGCTATCGATTCTTTTTCTCATCCAAAATCACCATCTTCCTCATCATCATTAAAAAGGACACGAGGTAGGCCTCTAGGTTCCAAGAACAAACCGAAATTAACCCTTCCAATTAATCAAAACAATGAGCATGATGAAAAACCTATTTTTATCCAAATCCCTAAAAACTCTGATGTAATTGAGACATTGATCAAATTTGCCCGTGACTACAAAATTAGCATTACAGTGAGAAGTGCATCAGGATCTATTCTGAACGCTACTCTCCGTGACAATCAATATGGAACTTCTACTTTCATTGTTCATGGACCATTCACTTTAGTTTCTCTTACTGGAACTTGCATACATAACAACTCTTCTGGTGTTTCGTTATCGTCTAATGTTGATCTGAGTTGTTTTTTCAATATTTCTTTTTGCTCAAATTCAGGTCAAAGCTTTATTGGAATTGTTGGAGGAAAGGTTATGGCAGGTGACAATGTTGTTCTGACTATTACTGTCTTTAGAAACTCTTAA 576 0.3576 MVESVKLSSSTPLSSSDDNTFDDAIDSFSHPKSPSSSSSLKRTRGRPLGSKNKPKLTLPINQNNEHDEKPIFIQIPKNSDVIETLIKFARDYKISITVRSASGSILNATLRDNQYGTSTFIVHGPFTLVSLTGTCIHNNSSGVSLSSNVDLSCFFNISFCSNSGQSFIGIVGGKVMAGDNVVLTITVFRNS* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0832 191 MobiDBLite consensus disorder prediction 1 62 - -
Vra11g0832 191 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 30 190 - -
Vra11g0832 191 CDD DUF296 69 188 IPR005175 -
Vra11g0832 191 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 30 190 IPR014476 GO:0003680
Vra11g0832 191 Pfam Plants and Prokaryotes Conserved (PCC) domain 69 189 IPR005175 -
Vra11g0832 191 MobiDBLite consensus disorder prediction 1 22 - -
Vra11g0832 191 MobiDBLite consensus disorder prediction 29 45 - -
Vra11g0832 191 ProSiteProfiles PPC domain profile profile. 65 191 IPR005175 -
Vra11g0832 191 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 189 - -
Vra11g0832 191 Gene3D - 69 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0832 Vra-Chr11 6908497 6909274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0832 13 190 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.889 1.90e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0832 - - var:108336502 241.506