Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0826 ATGACGACCACGACGACAGCAACAACCTTTGATGTCTCCGCCGCTTGTTTTCGTGTTCCTCCGTCGTCTTCTCCTCGTTTCTCACGCAATCCATGCCACACCAGGTTTTCAGTTCTGAACTCCTTGAATCCTCACAGGGGACGGATAAGCGTGAACGTTCCACCCAAGTTTCCAAACTTCCGGATGGAAGTTGCACTGAAGGGGGATTTGGAGGCTGTTGTTCCAACTTCGGTGCCTGTGCGTGTTGCATATGAACTTCTTCTAGCTGGTCATCGATATTTGGATGTGAGGACCCCAGAAGAATTTGATGAAGGACACGTTCCTGGCGCAATAAACATACCTTACATGTTCAGAGTTGGATCAGGGATGACGAAGAACGGCAACTTCATTACAGAGGTGTCCTCACATTTTAGGAAGGACGATGAAATTATAGTTGGGTGCCAGCTTGGTAAAAGATCTATCATGGCTGCGAGTGACTTGCTAGCTGCTGGGTTCACAGGACTGACAGACATGGCTGGTGGCTTTGCAGCTTGGACACAAAATGGGCTTCCAACAGAACGATGA 564 0.4876 MTTTTTATTFDVSAACFRVPPSSSPRFSRNPCHTRFSVLNSLNPHRGRISVNVPPKFPNFRMEVALKGDLEAVVPTSVPVRVAYELLLAGHRYLDVRTPEEFDEGHVPGAINIPYMFRVGSGMTKNGNFITEVSSHFRKDDEIIVGCQLGKRSIMAASDLLAAGFTGLTDMAGGFAAWTQNGLPTER* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0826 187 Pfam Rhodanese-like domain 93 180 IPR001763 -
Vra11g0826 187 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 15, CHLOROPLASTIC 1 186 - -
Vra11g0826 187 CDD RHOD 94 178 - -
Vra11g0826 187 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 15, CHLOROPLASTIC 1 186 - -
Vra11g0826 187 SMART rhod_4 77 184 IPR001763 -
Vra11g0826 187 ProSitePatterns Rhodanese signature 1. 102 113 IPR001307 GO:0004792
Vra11g0826 187 Gene3D - 67 186 IPR036873 -
Vra11g0826 187 ProSiteProfiles Rhodanese domain profile. 87 187 IPR001763 -
Vra11g0826 187 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 76 186 IPR036873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0826 Vra-Chr11 6854914 6857282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0826 62 184 Sulfurtransferasese or Rhodanese AT5G66170 41.600 4.43e-30 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0826 - - gmx:100305968 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0826 11 6854914 6857282 Vra7g0148 7 2464930 2468320 PCT