Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0825 ATGGTGATCGAGCATGACATTGAGAGCTGCGGGAGCAGAGCGGTGCAGTTGTCGCACGCTAACCACCCTCGACACCACCGCCAGAAACTGGAGGTGTACAATGAGGTGTTGCGGCGGATTCAGGATTCCGATTGCGAGGAGGCTCACGTTCCCGGCTTCGATGATCAGCTTTGGCTTCACTTCAATCGCCTTCCTGCTAGGTACGCGTTGGATGTAAATGTTGAGAGGGCAGAAGATGTTCTGGCTCATAAAAGATTGCTCAAGTTGGCGGAGGATCCCGCATCTCGACCTGCATTTCAAGTTCGGTTAGTACAGGTATATCCTTTTGGTGGTGCAAATTATTCTGATTCCATGCATTCAGATCCTTCTGAAATGGAGGATGCTCAGAGTTCTCTTAACTATTCTTTAAAGCAGGGAATTCATCCACCACCCACATTTGGTTCATCCTCTAATCTAGAAGCTCTTGCACTTCAAACAACCAAAAATAACATTGAAGATGGGGGAAGTGCTATGAGTGTAACACCATATTTTCACAGGCCCATGCACGAGATTACCTTTTCAACAGTTGACAAGCCTAAACTCCTTAGTCAGTTAACATCAATACTTGGTGAGATGGGACTGAATATTCAAGAAGCTCATGCATTTTCCACCACTGATGGATTTTCTCTGGATGTCTTTGTTGTTGAGGGATGGCCCAATGAGGAAACCGAGGAGCTGAAAGGTGTGTTAGAAAAGGAAATTTCCAAGGTTAAGGAGCAGAATATGTCAAATCAGGGCATACATTGTGCTGCCAATGATCATTACCAGACAAGGATAGAGCAATCCCCTCACTGCATTCAAATACCAACTGACGGAGCTGATGTATGGGAACTTGATACCAACCAGCTGAAATATGAAAACAAAGTTGGCTCTGGGTCATTTGGTGACTTGTACAGAGGTACATATTGCAGTCAAGATGTTGCTATCAAAGTTCTGAAGCCAGAGCGCATAAGTACAGATATGCTGAAGGAGTTTGCACAAGAAGTTTATATCATGAGGAAGATTCGACATAAGAATGTTGTTCAGTTCATCGGCGCATGTACCAGGCCCCCTAATCTTTGTATTGTTACGGAGTTTATGTCTAGGGGAAGCTTATATGACTTTCTGCACAAACAAAGAGGTGTATTTAAGCTTCCATCTTTGCTAAAAGTAGCAATTGATGTTTCCAAGGGAATGAACTATTTGCACCAAAATAATATAATTCACAGGGACCTCAAGACTGCCAATCTTCTGATGGATGAAAATGAAGTGGTAAAGGTTGCTGATTTTGGGGTTGCTAGAGTGCAAACTCAGTCTGGTGTGATGACAGCTGAAACTGGAACATACCGTTGGATGGCTCCTGAGGTCATTGAACACAAACCATATGACCAGAAGGCAGATGTTTTCAGTTTTGGAATAGCTCTCTGGGAGCTTTTAACTGGAGAACTACCATACTCTTGCTTGACCCCATTACAAGCAGCAGTCGGCGTGGTGCAGAAGGGCCTAAGGCCTACAATTCCTAAAACAACACACCCAAGACTTTCTGAACTGCTTCAGCGCTGCTGGCAACAAGATCCGACTCTCAGACCAGATTTCTCTGAAATAATAGAAATTCTTCAGCACATAGCAAAAGAGATTAATAATGATCACAAGGATAAATCATCCCATGGCTTTCTCTCAGCTCTTAGACGGGTCCATCACTAA 1722 0.439 MVIEHDIESCGSRAVQLSHANHPRHHRQKLEVYNEVLRRIQDSDCEEAHVPGFDDQLWLHFNRLPARYALDVNVERAEDVLAHKRLLKLAEDPASRPAFQVRLVQVYPFGGANYSDSMHSDPSEMEDAQSSLNYSLKQGIHPPPTFGSSSNLEALALQTTKNNIEDGGSAMSVTPYFHRPMHEITFSTVDKPKLLSQLTSILGEMGLNIQEAHAFSTTDGFSLDVFVVEGWPNEETEELKGVLEKEISKVKEQNMSNQGIHCAANDHYQTRIEQSPHCIQIPTDGADVWELDTNQLKYENKVGSGSFGDLYRGTYCSQDVAIKVLKPERISTDMLKEFAQEVYIMRKIRHKNVVQFIGACTRPPNLCIVTEFMSRGSLYDFLHKQRGVFKLPSLLKVAIDVSKGMNYLHQNNIIHRDLKTANLLMDENEVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDQKADVFSFGIALWELLTGELPYSCLTPLQAAVGVVQKGLRPTIPKTTHPRLSELLQRCWQQDPTLRPDFSEIIEILQHIAKEINNDHKDKSSHGFLSALRRVHH* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0825 573 ProSiteProfiles ACT domain profile. 183 258 IPR002912 -
Vra11g0825 573 SUPERFAMILY ACT-like 181 249 IPR045865 -
Vra11g0825 573 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 16 561 - -
Vra11g0825 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Vra11g0825 573 Coils Coil 233 253 - -
Vra11g0825 573 CDD STKc_MAP3K-like 302 545 - -
Vra11g0825 573 SUPERFAMILY Protein kinase-like (PK-like) 275 545 IPR011009 -
Vra11g0825 573 Gene3D Phosphorylase Kinase; domain 1 286 374 - -
Vra11g0825 573 Pfam Protein tyrosine and serine/threonine kinase 296 545 IPR001245 GO:0004672|GO:0006468
Vra11g0825 573 PRINTS Tyrosine kinase catalytic domain signature 370 383 IPR001245 GO:0004672|GO:0006468
Vra11g0825 573 PRINTS Tyrosine kinase catalytic domain signature 407 425 IPR001245 GO:0004672|GO:0006468
Vra11g0825 573 PRINTS Tyrosine kinase catalytic domain signature 453 463 IPR001245 GO:0004672|GO:0006468
Vra11g0825 573 PRINTS Tyrosine kinase catalytic domain signature 472 494 IPR001245 GO:0004672|GO:0006468
Vra11g0825 573 PRINTS Tyrosine kinase catalytic domain signature 516 538 IPR001245 GO:0004672|GO:0006468
Vra11g0825 573 Gene3D Transferase(Phosphotransferase) domain 1 375 568 - -
Vra11g0825 573 ProSiteProfiles Protein kinase domain profile. 296 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0825 573 ProSitePatterns Protein kinases ATP-binding region signature. 302 323 IPR017441 GO:0005524
Vra11g0825 573 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 16 561 - -
Vra11g0825 573 SMART serkin_6 296 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0825 573 CDD ACT_TyrKc 181 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0825 Vra-Chr11 6843851 6853799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0825 2 572 MAP Kinase Kinase Kinase AT4G35780 69.861 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vra11g0825 PK_Tyr_Ser-Thr 1.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0825 - - gmx:100816767 1102.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g0056 7 1256842 1259150 Vra11g0825 11 6843851 6853799 PCT