Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0821 ATGGCCGATTCTCCGCCGAGAAGGAATTCAAGGTCCCCTTCCCCATGGAGGGCTCAGTCAAGATCGAGGTCTAGGTCTAGATCTAGGCCAAGGTCTAGGTCCCGGTCAAGATCATTTGAAAAACAAAGGCCAAGGTCTCGCTCCAGAAGTCGTGGAAGATCAAGATCAAGAAGTAATGACAGGATGGAGACTAAAAATACAGGGAATACACTTTATGTCACTGGTCTATCTTCAAGGGTCACTGAGAGAGACCTGGAGGAGCATTTCTCTAAAGAGGGAAAGGTTGCTTCGTGTTTTCTTGTGGTGGAGCCCCGTACTCGCATTTCTCGAGGTTTTGCTTTTATTACAATGGATACCGTTGAGGATGCAAACCGCTGCATCAAATATCTCAATCAATCAGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCCCGAAGAAAGCGTGCAAGAACTCCTACACCTGGACACTATCTTGGCCTGAAAAGTACTCGAGACTATGGATATCGCGGTGACCGCGGAAGGTATAGAGGAGGTGGATCTGGTCGTGATGATTATGCATATCGAGGAGAGCGTGGAAGGTCTCCAAGGCGCTCACCTTATCGAGGTGGTAGAGATTATTCTCCGAGGCATTCACCGCCACCTTATGGCGGAAGAACTAGGAGGGATAGGTCCAGGTCACTTCCATACTCTCCATATGGTAGCCCAGACAGGAGGTATGCTCGTGGATCTAGGTGA 738 0.4892 MADSPPRRNSRSPSPWRAQSRSRSRSRSRPRSRSRSRSFEKQRPRSRSRSRGRSRSRSNDRMETKNTGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDTVEDANRCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKSTRDYGYRGDRGRYRGGGSGRDDYAYRGERGRSPRRSPYRGGRDYSPRHSPPPYGGRTRRDRSRSLPYSPYGSPDRRYARGSR* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0821 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
Vra11g0821 245 MobiDBLite consensus disorder prediction 145 245 - -
Vra11g0821 245 SMART rrm1_1 70 143 IPR000504 GO:0003723
Vra11g0821 245 MobiDBLite consensus disorder prediction 1 73 - -
Vra11g0821 245 MobiDBLite consensus disorder prediction 1 21 - -
Vra11g0821 245 PANTHER RNA RECOGNITION MOTIF 2 241 - -
Vra11g0821 245 CDD RRM_RBMX_like 68 147 - -
Vra11g0821 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
Vra11g0821 245 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 2 241 - -
Vra11g0821 245 Gene3D - 8 153 IPR012677 -
Vra11g0821 245 SUPERFAMILY RNA-binding domain, RBD 15 145 IPR035979 GO:0003676
Vra11g0821 245 MobiDBLite consensus disorder prediction 166 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0821 Vra-Chr11 6794113 6797131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0821 67 154 Eukaryotic Initiation Factors Gene Family AT1G49760 30.682 1.45e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0821 K12897 - gmx:100527350 339.732