Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0820 ATGGCGGACACTGGTGGCGACGATAATGGCGTCACCTATCTTCACGGTGACCTCGATTTGAAAATTATCGAGGCAAGGCACTTGCCGAACATGGACATCTTCTCGGAGCGTCTTCGCCGCTGCGTAACCGGCTGCGACACTATCAAATTCCACTCCGAGGACCCCGCCGAGAGTGGAAGCCAGCGGACGCGGCAGCGCCACCACCGCAGGATCATAACAAGTGACCCGTACGTGACGGTTTCGGTGCCGCAGGCGACGGTGGCACGCACGCGCGTGCTGAAGAACTCGTCGGATCCTCTGTGGAACGAGCGGTTCCACATCCCGCTCGCGCATCCGGTTGTGGATTTGGAGTTCCGCGTGAAGGACGACGACGTTTTCGGCGCGCAGATAATTGGGACCATGAAGATTCCGGCGCAGCGGATTGCCACAGGCGAGTTGATTTCCGGCTGGTTCCCTGTCGTCGGGCCGTCTGGGAAGCCGGCGAAGCCGGACACGGCGCTGCACGTGGAGATGAAATTCATGTCGGTGGAGAAGAATTTGCTTTACAAGCGAGGCATTGCGGCGGATCCGGAGCAACGCGGAGTGAGGCACACGTATTTTCCGGTGAGAAAGGGGAGTTCGGTGAGGTTGTACCAGGATGCGCAATGTCCTGAAACTGGCGGAGCGAAGTTGCCGGAGGTTAAGCTTGAGAATGGAGAGGTTTACAGGCACGGAAAGTGTTGGGAGGATATTTGTTATGCCATATCCGAGGCTCATCACATGGTGTATTTGGTGGGCTGGTCGATTTACCATAAGGTGAAGCTTGTTAGAGAGCCTACTAGGCCGTTGCCACGAGGTGGCGATTTGACGCTTGGCGAATTGCTGAAGTATAAGTCTGAAGAAGGGGTGAGAGTGCTGTTGCTGGTTTGGGATGATAAAACTTCGCACGACAAGGTTTTCCTCAAGACGACTGGTGTGATGCAGACTCATGATGAGGAAACCAGGAAGTTTTTTAAACATTCTTCAGTAATGTGTGTTCTGTCGCCTCGGTATGCCAGCAGCAAGATGAGCTTCTTGAAGCAACAGGTTGTTGGAACGGTCTTCACACACCACCAAAAATGTGTGATCGTGGACACACAGGCCACGGGGAATAATCGGAAGATAACTGCTTTTATTGGAGGTCTTGATCTTTGTGATGGTCGCTATGACACACCTGAGCATCGTCTGTTTCGTGATCTTGACACTGTATTTTCTGAGGATTTCCACAATCCTACATTTCCTGCTGGAACAAGGGCTCCTAGACAACCATGGCATGATTTACACTGCAGAATAGATGGACCTGCTGCATATGATGTTCTTATTAATTTTGAGCAGCGATGGAAAAAGGCAACTAAGTGGAAAGAATTTGCGATCCTTTTCAAAAAATCCTCTCAATGGCATGATGATGCTTTGATAAGAATAGAACGCATCTCATGGATATTAAGTCCTTCCGTTACCACGAAGGAGAATTATACAGTTGTTCCAGAGGATGATCCTTTAGTATGGGTTTCTAGGGAAGATGATCCTGAAAACTGGCATGTTCAGATCTTCCGCTCCATTGACTCAGGGTCCCTCAAAGGATTTCCCAAACATGTTGATGTTGCTCTGTCCCAGAATCTTATTTGTGCTAAAAGTTTGGTCATAGAAAAAAGCATTCAAACAGCGTACATTGAAGCAATAAGATCTGCTCAACACTTTATTTATATTGAAAACCAGTACTTCATTGGATCATCGTATGCATGGCCTTCTTATAAAGATGCAGGGGCTGATAATCTTATTCCAATGGAGTTGGCACTGAAAATTGCTAGTAAAATCAGAGCTAAGGAAAGGTTTGCTGTCTATGTTGTTTTACCAATGTGGCCAGAAGGTGATCCAAAAACTGGGGCTATGCAAGAAATCCTCTTTTGGCAGGGCCAAACAATGCAAACAATGTATAACGTAGTTGCTAGGGAGTTAAAAGCAATGCAACTTTCTCATATAAACCCACAAGATTACCTCAATTTTTATTGCCTTGGTAATCGGGAAGACTTCAGTGAAGAAAGTTCAAGCACGTCTCAGGAGCATATAAATATCGCAGATTTATGATTTATGTGCATGCTAAGGGAATGATCGTTGATGATGAGTATGTTATAATTGGATCTGCTAATATAAACCAAAGATCTATGGCTGGTACTAAAGATACTGAGATAGCTATGGGTGCATATCAACCCCATTACACATGGTCAGCAAAGCAAAGACATCCATATGGTCAGATTTATGGTTACAGAATGTCACTTTGGGGAGAGCATCTTGGCATGTTAGATGAAACTTTTGGGGAGCCAGAGAGTTTGGAGTGTGTGCATACAGTGAATCAAATTGCTGAAAACAATTGGAAATTATTCGCTTCTGAAGATTTCTCGCTATTGCAAGGACATCTTCTTAAGTATCCTGTAAAGGTAGATTCTGATGGAACGATTAGATCCCTACCGGACTGTGAGAATTTTCCCGATGCTGGCGGTAAGATATTAGGTGCTCACTCCACAGCAATCCCAGATATTCTAACAACTTAA 2567 0.4632 MADTGGDDNGVTYLHGDLDLKIIEARHLPNMDIFSERLRRCVTGCDTIKFHSEDPAESGSQRTRQRHHRRIITSDPYVTVSVPQATVARTRVLKNSSDPLWNERFHIPLAHPVVDLEFRVKDDDVFGAQIIGTMKIPAQRIATGELISGWFPVVGPSGKPAKPDTALHVEMKFMSVEKNLLYKRGIAADPEQRGVRHTYFPVRKGSSVRLYQDAQCPETGGAKLPEVKLENGEVYRHGKCWEDICYAISEAHHMVYLVGWSIYHKVKLVREPTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKVFLKTTGVMQTHDEETRKFFKHSSVMCVLSPRYASSKMSFLKQQVVGTVFTHHQKCVIVDTQATGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFSEDFHNPTFPAGTRAPRQPWHDLHCRIDGPAAYDVLINFEQRWKKATKWKEFAILFKKSSQWHDDALIRIERISWILSPSVTTKENYTVVPEDDPLVWVSREDDPENWHVQIFRSIDSGSLKGFPKHVDVALSQNLICAKSLVIEKSIQTAYIEAIRSAQHFIYIENQYFIGSSYAWPSYKDAGADNLIPMELALKIASKIRAKERFAVYVVLPMWPEGDPKTGAMQEILFWQGQTMQTMYNVVARELKAMQLSHINPQDYLNFYCLGNREDFSEESSSTSQEHINIADL*FMCMLRE*SLMMSML*LDLLI*TKDLWLVLKILR*LWVHINPITHGQQSKDIHMVRFMVTECHFGESILAC*MKLLGSQRVWSVCIQ*IKLLKTIGNYSLLKISRYCKDIFLSIL*R*ILMERLDPYRTVRIFPMLAVRY*VLTPQQSQIF*QL 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0820 844 PIRSF PLD_plant 5 727 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vra11g0820 844 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 359 394 IPR001736 GO:0003824
Vra11g0820 844 Gene3D Endonuclease Chain A 227 478 - -
Vra11g0820 844 CDD C2_plant_PLD 10 174 - -
Vra11g0820 844 SUPERFAMILY Phospholipase D/nuclease 200 467 - -
Vra11g0820 844 SUPERFAMILY Phospholipase D/nuclease 553 653 - -
Vra11g0820 844 Pfam Phospholipase D Active site motif 359 394 IPR001736 GO:0003824
Vra11g0820 844 Gene3D C2 domain 14 183 IPR035892 -
Vra11g0820 844 ProSiteProfiles C2 domain profile. 1 151 IPR000008 -
Vra11g0820 844 SMART C2_3c 17 150 IPR000008 -
Vra11g0820 844 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 175 IPR035892 -
Vra11g0820 844 Pfam C2 domain 16 153 IPR000008 -
Vra11g0820 844 Gene3D Endonuclease Chain A 527 695 - -
Vra11g0820 844 PANTHER PHOSPHOLIPASE D 10 693 IPR015679 -
Vra11g0820 844 PANTHER PHOSPHOLIPASE D DELTA 10 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0820 Vra-Chr11 6776595 6785839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0820 1 691 Phospholipase D Gene Family (Wang group) AT4G35790 71.388 0.0 1041
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0820 K01115 - gmx:100814486 1259.59