Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0812 ATGGAGTTTGAGCCAAATCCCTGTCCTTTGCGTTCGTCTTCGCTCGGGAATCTCGTCGAGAGGGTTAAGCAGCTTGGTACCCTCGCCGTCTCCGCCGTCATTGGGAACATCTTCTCTGCGATCTTGACCTTCTGCTTTGCATTAGTGGGAACTTTGTTGGGGGCCTTGACTGGAGCTTTGATAGGACAAGAAACCGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGAGCCATATCAGGAGCTGTATTTTCCATTGAAGTGTTTGAATCGTCTCTTGTTCTTTGGCAATCTGACGAATCTGGAATTGGCTGCGTGTTATATTTGATTGATGTTATCGCCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATAGGTCCAGCCATGTTGAGTGCTGTTCAAAATCAGATGGGTGCTGTCGAAACCAGCTTTGATGAGGTTCAAAACATCTTTGACACCGGTGGTGCCAAAGGTTTGTCTGGAGATTTGGTTGAAAAAATCCCAAAAATAAAAATTACAACTGACAACAATATTGATGCATCTGGTGACAGAGTTTCTTGTTCAGTTTGCCTGCAGGACTTTCAGCTTGGAGAAACAGTAAGAAGCTTACCTCATTGCCATCACATGTTTCACCTTCCTTGCATAGATAAGTGGCTCTTTAGACATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 699 0.4578 MEFEPNPCPLRSSSLGNLVERVKQLGTLAVSAVIGNIFSAILTFCFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCVLYLIDVIASLLSGRLVRERIGPAMLSAVQNQMGAVETSFDEVQNIFDTGGAKGLSGDLVEKIPKIKITTDNNIDASGDRVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0812 232 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 11 232 IPR044523 -
Vra11g0812 232 SUPERFAMILY RING/U-box 174 232 - -
Vra11g0812 232 SMART ring_2 187 228 IPR001841 -
Vra11g0812 232 CDD RING-H2_PA-TM-RING 187 229 - -
Vra11g0812 232 PANTHER NEP1-INTERACTING PROTEIN-LIKE 1 11 232 - -
Vra11g0812 232 Pfam YMGG-like Gly-zipper 46 81 IPR027367 -
Vra11g0812 232 ProSiteProfiles Zinc finger RING-type profile. 187 229 IPR001841 -
Vra11g0812 232 Pfam Ring finger domain 186 229 IPR001841 -
Vra11g0812 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 232 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0812 Vra-Chr11 6715398 6717855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0812 17 232 C3H Transcription Factor Family AT5G66070 76.852 4.99e-119 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0812 - - gmx:100807641 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0812 11 6715398 6717855 Vra7g0174 7 2693390 2695432 PCT