Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0806 ATGGTTTTCGAAGGAGTAAATGAGATGACTCTGAAAGGCTTGGTATCACTTGTGAGCAATCTGATTGGCCTAGCCGAAGGACAAAGGAAAAAGGATGTCCCTTTACCTTCTTATATGAGCAATTTGAATGAAGATTGTTGGTGTTGTGTGTGTTTATCAAGGTTAAAGGCAAGAGATGAAATCCGTGTTCTTCCTTGCTCTCACAAATTCCATAAGATTTGTGTAAATAGATGGCTTAAGGGTCACCACAAAACATGCCCACTTTGCCGTTTCTCATTGGGATCAGCAGAGCAAAAGTCTCATCGTCCTGATATCTTCACTGAAGAGATGTTGATATGGTTTTCTTCTTTCCATATAGCTGGTATGTGA 369 0.4011 MVFEGVNEMTLKGLVSLVSNLIGLAEGQRKKDVPLPSYMSNLNEDCWCCVCLSRLKARDEIRVLPCSHKFHKICVNRWLKGHHKTCPLCRFSLGSAEQKSHRPDIFTEEMLIWFSSFHIAGM* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0806 122 PANTHER TARGET OF ERK KINASE MPK-1 38 104 - -
Vra11g0806 122 CDD mRING-H2-C3H2C2D_ZSWM2 48 90 - -
Vra11g0806 122 PANTHER GB|AAF27103.1 38 104 - -
Vra11g0806 122 SMART ring_2 48 89 IPR001841 -
Vra11g0806 122 ProSiteProfiles Zinc finger RING-type profile. 48 90 IPR001841 -
Vra11g0806 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 96 IPR013083 -
Vra11g0806 122 Pfam Ring finger domain 48 90 IPR001841 -
Vra11g0806 122 SUPERFAMILY RING/U-box 42 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0806 Vra-Chr11 6659636 6660204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0806 44 100 C3H Transcription Factor Family AT1G80400 47.368 5.58e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0806 - - vra:106777444 262.307