Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0793 ATGCTCATGGCTTGTGCAGGAAGAGGGAGTTTAGTTATGGCAGAAAACAAAGACGAAGTCTATTCTGAAACATCTGAATGTTCACCAGCTTTAACCATGCCAATGGCTAGCAGGTGCAGATGCTTGTTTCATAGATTATGCGGTTCTACCGATTCATGGAACAAGAGCACCACCCCAAAAGGTCGAAGACTTTTCCACAGAGACGTGGAAAAAGAAGAATTCCAGTATGCTAGTAGTCACTGTCTCTCATCGTACTATAGTGTCTTTGTGGTTCGACTAGCAATCATGGTCATGCTAGCCATCTTGATAGGCCTTCTCACTATACTGACATGGCATTTCACGAAGATTTACACAGCAAAATCACTTAGCAGTTTGGCATATGGTTTGCGTTATGAACTTCTGCAACGCCCGGTTTTGAGGATGTGGAATATTTTGAACTCTACTTCTGAAATTACTACAGCTCAGGTCAAACTGTCTCAGTATGTGATCAGACGTCACAGCAACCCTGCAACTCAAGCAGAACAAGTTGAGCTGTATGAAGCGATGAGGGCTGTAACATGGGCTTTATTTGCAAGTCGGAAAGCTCTAAACTCTATAACTATCAACTATAGGAATGGATTTGTGCAAGCATTCCACAGAGATCTGAAGGACAACAACACATTTTACATCTATTCTGATCTTTCAAATTATTCTATGGGAGTCAGCAACTCCAACGAGGCCAATTCCGTTTCAACACATCAAGCATGGGATGATAAAGCCCCTCGTGGAAACTATTCTGCAATATGGTACCGTGAGCCACTTGACCCCGTGAGTGGTGAAAAGATAGGAAAAGCTATGGAAATTGCTCCTGAAGACTTGATTAACATAGCTGGCCTTTCTCAAGTACCTGATGGTGTAGCTTCATGGCATGTTGCCGTGAGCAAGTTCACAGATTCACCACTGCTTTCAGCAGCATTGCCAGTTTGGGACTCTTCTAATGAGACCATTATGGCAGTTGTGGGGGTCACAACTGCACTTTACAGTGTAGGACAGTTGATGAGAGAGCTTGTTGAGTTGCACAGTGGCCATATGTACTTGACTTCCCAAGAGGGTTATTTGCTTGCAACTTCCACAAGTGCACCTCTTCTGGCAAATTCAACAAAGCCTCCTAAGCTTAAGATGGCCGTTGACTGTGAAGACAACGTAATTCGACAGGGAGCTGAGTGGTTACAGAGAACTTATGGGAACAATTTTCCTCCAAGTCACGAGATTCATGTTGAAAATGTCAAGCTTGGCCACCAAAGATATTACATTGACTCGTTTTTCCTTAAATTGAGGAGACTTCCTTTGGTTGGTGTGATTATCATACCAAGAAAGTATATCATGGGACAGGTTGATGAAAGAGCCTTCAAAACACTGGTTATTCTGATATCTGCATCATTATGTATTTTAGTCATTGGGTGTGTTTGCATTCTGATATTGACAAACGGAGTATCAAAGGAAATGAATCTAAGAGCAGAACTGATAAGTCAACTGGAAGCAAGAAGAAAAGCAGAGNCATCAAGCAATTACAAAAGTCAATTCCTTGCAAACATGAGTCACGAACTGAGGACACCTATGGCAGCAGTAATCNGGTTGCTTGACATTCTCATATCTGATGACTGTCTCACAAATGAACAATATTCAACCGTGACTCAAATAAGAAAATGCTCAACTGCTCTGCTCCGTCTTCTTAACAACATCTTGGATCTGAGTAAGNTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGATTTAGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTCCAGTGCATTAACCACAATGTGGAGACTGTTTTAGACTTGTCTGATGATATGCCAAAGATCGTTCGGGGTGATTCTGCAAGGGTGGTTCAAATATTTGCAAATCTGATCAACAATTCAATCAAGTTCACTCCATCGGGTCATATTGTTCTGCGGGGATGGAGTGAAAGCCCAAATTCTTCGGTTGGAAGTCCAAATTTTCCTCTTGATCAGAAGAAATTATGGAATTTACAGAAGTGCAGAGAGAAACCAAATGCAAATCATTCAAAAAAAGCATCTATGAAAGACAGCAAAGTGATACTTTGGTTTGAAGTTGAGGACACAGGCTGTGGTATTGACCCAAGCAAGTGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTCGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATAGTCAGAAACTTGGTTAACAAGATGGGTGGGGACATCAAAGTAGTAAAAAAGGAGGGCGCAGGAACACTGATGCGATTATGCTTACTTCTCAGTGCGCCCATGGATGTCACAGAACAACAGTGTGCAGTAGATTTGACAGACAATGGCTTAGTGGTACTGCTTGGCTTACATGGCAACATGGGTAGATTAATTACATCCAAGTGGCTTCAGAAAAACGGGGTGTGCACAATGGAAGCATCTGACTGGAATGGACTAACTCAAATTTTGAGGGAACTATTTCATGTACGAAGTTCACTCCATAATACTGACTTTGATGCACACTATCCAACCAAAGAGGAATTGAAGTCTAAACTACTGAGCATACGAGATATGAGGAACCCAGTTTTTGTCATTGTTGTTGACATTGGATTACTTGACTTGAGCACAGATATATGGAAGGATCAACTTAACTTCCTTCACAGGTACTTCGGTAGAGCAAAGTTCATATGGATGCTGAATCATGACACTTCCAATAACATAAAGATGGAGCTCCGTAGGAAAGGACATTTACTGATGGTCAACAAACCCCTTTACAAGGGAAAAATGATCCATATTTTGGAATCAGTTATAAAGGAGAGAAATTTTGAGCTACAAAAGAAAAGCATGATTGTTCCAAGGACCACAATGAAAGAGGGAGATTTACACGAATTTCTTGAGATTGATTCCACTCATTTTGATGCTGCTAGTTCTGATGATTCTGACATATCTGATATAGCTGGTTCAAATCCTGCTAGTGCTGATGGAGATAAACCAGTTGAGAAGCTAGACAAATCTCATCCATCATCACCATACCATATGGATAACTGCCTAGTTAGATTAACCAATGAAAATGAATATTTGGAGGAAAATGATTTGAGGAAAGGAGAATCTTCTAGTCCCGGCCCAGATCATGCCACTGAAGAAAACCAACCTAAATCACTGTCCACCAAAGAATCATCATCCATTTCAACAGGAGAGCAGGATGGAGATTCTGAATGTGGTGAAACACACAGGGTGACCAGCACAAGTAAATCAGTAGATGGAAAGAAATCTCTTGAGGGCCTAAAGATTTTGCTTGCAGAAGATACACCAGTGCTTCAAAGGGTTGCAACTATAATGCTTGAGAAAATGGGAGCTGCTGTAGTTGCTGTAGGTGATGGACAACAGGCAGTAGAAGCTCTCAATTGCATGTTCACTGCTGAAGATTGCAGAAGGGAATCACTCCAGAAGGATAGAAACAAAAGATCTCAAACAGAGATTTTGTCTAGCCGTCCCTATGATTTGATCCTGATGGATTGTCAGATGCCAAAGATGGATGGCTATGAGGCAACAAAAGAAATCAGGAAATCAGAAGTGGGAACAAGCTTTCACATTCCCATTGTTGCTCTTACAGCACATGCAATGTCCTGTGATGAAGCCAAATGCCTGGAGGTGGGCATGGATGCTTACTTAACAAAGCCAATTGATTTCAAAATGATGGTGTCCACCATTCTTTCACTCACTAAAACAACATCTTCAACTCTCTCATAA 3798 0.415 MLMACAGRGSLVMAENKDEVYSETSECSPALTMPMASRCRCLFHRLCGSTDSWNKSTTPKGRRLFHRDVEKEEFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLSSLAYGLRYELLQRPVLRMWNILNSTSEITTAQVKLSQYVIRRHSNPATQAEQVELYEAMRAVTWALFASRKALNSITINYRNGFVQAFHRDLKDNNTFYIYSDLSNYSMGVSNSNEANSVSTHQAWDDKAPRGNYSAIWYREPLDPVSGEKIGKAMEIAPEDLINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNETIMAVVGVTTALYSVGQLMRELVELHSGHMYLTSQEGYLLATSTSAPLLANSTKPPKLKMAVDCEDNVIRQGAEWLQRTYGNNFPPSHEIHVENVKLGHQRYYIDSFFLKLRRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEXSSNYKSQFLANMSHELRTPMAAVIXLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKXESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKIVRGDSARVVQIFANLINNSIKFTPSGHIVLRGWSESPNSSVGSPNFPLDQKKLWNLQKCREKPNANHSKKASMKDSKVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGDIKVVKKEGAGTLMRLCLLLSAPMDVTEQQCAVDLTDNGLVVLLGLHGNMGRLITSKWLQKNGVCTMEASDWNGLTQILRELFHVRSSLHNTDFDAHYPTKEELKSKLLSIRDMRNPVFVIVVDIGLLDLSTDIWKDQLNFLHRYFGRAKFIWMLNHDTSNNIKMELRRKGHLLMVNKPLYKGKMIHILESVIKERNFELQKKSMIVPRTTMKEGDLHEFLEIDSTHFDAASSDDSDISDIAGSNPASADGDKPVEKLDKSHPSSPYHMDNCLVRLTNENEYLEENDLRKGESSSPGPDHATEENQPKSLSTKESSSISTGEQDGDSECGETHRVTSTSKSVDGKKSLEGLKILLAEDTPVLQRVATIMLEKMGAAVVAVGDGQQAVEALNCMFTAEDCRRESLQKDRNKRSQTEILSSRPYDLILMDCQMPKMDGYEATKEIRKSEVGTSFHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKMMVSTILSLTKTTSSTLS* 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0793 1265 SUPERFAMILY CheY-like 1109 1257 IPR011006 -
Vra11g0793 1265 SMART REC_2 1111 1253 IPR001789 GO:0000160
Vra11g0793 1265 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 630 780 IPR003594 -
Vra11g0793 1265 MobiDBLite consensus disorder prediction 991 1101 - -
Vra11g0793 1265 ProSiteProfiles Histidine kinase domain profile. 524 782 IPR005467 -
Vra11g0793 1265 SMART HKATPase_4 630 782 IPR003594 -
Vra11g0793 1265 Gene3D - 585 783 IPR036890 -
Vra11g0793 1265 MobiDBLite consensus disorder prediction 1058 1085 - -
Vra11g0793 1265 CDD REC_hyHK_CKI1_RcsC-like 1113 1253 - -
Vra11g0793 1265 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 572 778 IPR036890 -
Vra11g0793 1265 MobiDBLite consensus disorder prediction 1040 1057 - -
Vra11g0793 1265 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 505 584 IPR036097 GO:0000155|GO:0007165
Vra11g0793 1265 PANTHER TWO-COMPONENT HISTIDINE KINASE 35 1258 - -
Vra11g0793 1265 Pfam His Kinase A (phospho-acceptor) domain 518 583 IPR003661 GO:0000155|GO:0007165
Vra11g0793 1265 CDD HisKA 518 579 IPR003661 GO:0000155|GO:0007165
Vra11g0793 1265 Gene3D - 1090 1261 - -
Vra11g0793 1265 Gene3D - 505 584 - -
Vra11g0793 1265 PANTHER OSMOSENSOR HISTIDINE KINASE 35 1258 - -
Vra11g0793 1265 SMART HisKA_10 517 583 IPR003661 GO:0000155|GO:0007165
Vra11g0793 1265 PRINTS Bacterial sensor protein C-terminal signature 707 721 IPR004358 GO:0016310|GO:0016772
Vra11g0793 1265 PRINTS Bacterial sensor protein C-terminal signature 725 735 IPR004358 GO:0016310|GO:0016772
Vra11g0793 1265 PRINTS Bacterial sensor protein C-terminal signature 742 760 IPR004358 GO:0016310|GO:0016772
Vra11g0793 1265 ProSiteProfiles Response regulatory domain profile. 1112 1257 IPR001789 GO:0000160
Vra11g0793 1265 Pfam Response regulator receiver domain 1113 1252 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0793 Vra-Chr11 6536759 6543727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0793 34 1261 Histidine Kinase Gene Family AT2G17820 62.811 0.0 1554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra11g0793 HATPase_c 2.4e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0793 - - vra:106777758 2418.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0793 11 6536759 6543727 Vra11g0793 11 6536759 6543727 ECH
Vra11g0793 11 6536759 6543727 Vra7g0152 7 2505103 2511396 PCT