Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0777 ATGATTTCTTCTGTGGCCTTTCAACCGTCTCTTCCCGCCGTTAACTTCTGCGGTAAAGCCGTGACCTCGCCGTCCTGTAAGGCCAGATCCCGCCCAATAGTCGCCTTCGCCACCGCTACCGCCACTGCAACCGAGGAAGCTCGATCTTCCTGGACGGAGAAACCACGCCCTTCGTATCTCAACTCCTCATGCTCTTCTCACTACGATATCCTCGGCATCCCCGCCGGTGCCTCCGCCCAGGAAATCAAGGCCGCGTACCGCCGGTTGGCCAGAATCTGCCACCCGGACGTGGCGGCGATCGACCGGAAAACTTCCTCGGCGGACGAATTCATGAAGATCCACGCCGCGTACTCCACTCTCTCGGATCCTGACAAACGCGCCAACTACGACCGGAGCCTATTCCGGCGACAACGGCCGCTGTCGACTGCGGCGGTGTTTTCTGGCTACACGCGCCGGAACTGGGAAACGGATCAGTGCTGGTAA 483 0.6004 MISSVAFQPSLPAVNFCGKAVTSPSCKARSRPIVAFATATATATEEARSSWTEKPRPSYLNSSCSSHYDILGIPAGASAQEIKAAYRRLARICHPDVAAIDRKTSSADEFMKIHAAYSTLSDPDKRANYDRSLFRRQRPLSTAAVFSGYTRRNWETDQCW* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0777 160 Pfam DnaJ domain 67 130 IPR001623 -
Vra11g0777 160 Gene3D DnaJ domain 57 152 IPR036869 -
Vra11g0777 160 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vra11g0777 160 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vra11g0777 160 PRINTS DnaJ domain signature 105 125 IPR001623 -
Vra11g0777 160 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 1 160 - -
Vra11g0777 160 ProSiteProfiles dnaJ domain profile. 66 133 IPR001623 -
Vra11g0777 160 SUPERFAMILY Chaperone J-domain 31 129 IPR036869 -
Vra11g0777 160 CDD DnaJ 67 122 IPR001623 -
Vra11g0777 160 ProSitePatterns Nt-dnaJ domain signature. 110 129 IPR018253 -
Vra11g0777 160 PANTHER - 1 160 - -
Vra11g0777 160 SMART dnaj_3 65 125 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0777 Vra-Chr11 6371178 6371981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0777 67 130 C2H2 Transcription Factor Family AT1G74250 43.284 6.17e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0777 - - vra:106777082 315.849