Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0771 ATGTGCCTGTGCCTGTGCCTCATCTATAATGACACCTATTATAATAACTTCATATCATCGCCTCGATCACCTTCGATCATTTCCTACAATTCAATTCATGCACTCTCCCTCCTCACCTTACCTACCCTCTCATTCTCATTCTCATTCTCTCTATCCAACAAACAACATTCTTTTTTGTTGCCTTGTCTTTGTTTCCACTCCATGATGGAACCTCAACAACCACAAGGGAGCCAACCAAACGACGAGGGTGGCAGTGGAAAAGGGGGCTTTCTCAGCAGGCAAAGTAGTACACGGTGGACTCCCACAACCGACCAGATAAGAATATTGAAGGACCTTTACTACAACAATGGAATTAGATCCCCAAGTGCAGAACAGATTCAGAGGATCTCTGCTAGGCTGAGGCAGTACGGTAAGATTGAAGGCAAGAATGTCTTTTATTGGTTCCAGAACCACAAAGCTCGAGAAAGGCAGAAGAAAAGGTTCACTTCTGATAATGTGCCCATGCAAAGACCTCCTGCCCCATCTAATGCTCTTCCTTGGAAACCTGATCAAGATCCTCCTATTCATACCAACTATTCTAACATTTCCTCTACGGGGATCTCTTCTGCATCATCTTCTTCTGTTGAGATGATTACTGTCGGCCAGATGGGGAATTATGGCTATGCTTCTGTGCCCATGGAGAAAAGTTTTAGGGACTGTTCGATATCTGCTGGAGGTAGCAGTGGCCATGTTGGAATAAACCACAACTTGGGATGGGTTGGCGTGGATCCTTATTCCTCACCCTACGCCAACTTCTTTGGCAAAATAAGGCCAACTGAAGAAACCCTGGAAGAAGAACAAGAAGAGGATGGTGCTGCTGAGATTGAAACTCTCCCTTTATTCCCTATGCACGGTGAGGACATTCATGGCTATTGCAACCTCAAGTCTAATAATTCTTACAACTATGATGGAAACGGCTGGTATCATTCTGAAGACGGCTTCAAGAATGGTTCTCGTGCTTCTTTGGAGCTCAGTCTCAACTCCTACACTCGCAGATCTCCAGATTTAGCTTAA 1053 0.4482 MCLCLCLIYNDTYYNNFISSPRSPSIISYNSIHALSLLTLPTLSFSFSFSLSNKQHSFLLPCLCFHSMMEPQQPQGSQPNDEGGSGKGGFLSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDNVPMQRPPAPSNALPWKPDQDPPIHTNYSNISSTGISSASSSSVEMITVGQMGNYGYASVPMEKSFRDCSISAGGSSGHVGINHNLGWVGVDPYSSPYANFFGKIRPTEETLEEEQEEDGAAEIETLPLFPMHGEDIHGYCNLKSNNSYNYDGNGWYHSEDGFKNGSRASLELSLNSYTRRSPDLA* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0771 350 ProSiteProfiles 'Homeobox' domain profile. 92 158 IPR001356 GO:0003677
Vra11g0771 350 SMART HOX_1 94 162 IPR001356 GO:0003677
Vra11g0771 350 Pfam Homeodomain 96 157 IPR001356 GO:0003677
Vra11g0771 350 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 69 343 IPR044555 GO:0003700|GO:0099402
Vra11g0771 350 Gene3D - 91 157 - -
Vra11g0771 350 MobiDBLite consensus disorder prediction 71 99 - -
Vra11g0771 350 MobiDBLite consensus disorder prediction 156 180 - -
Vra11g0771 350 CDD homeodomain 97 159 IPR001356 GO:0003677
Vra11g0771 350 PANTHER PROTEIN WUSCHEL 69 343 - -
Vra11g0771 350 SUPERFAMILY Homeodomain-like 90 164 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0771 Vra-Chr11 6296590 6298546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0771 90 300 Wox Gene Family AT2G17950 44.444 5.94e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vra11g0771 Homeodomain 2.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0771 - - vra:106776674 658.677