Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0762 ATGTCTGACGTTGCCGGAGAAGCTCCCGTACCCGCTCCCGCCGTGGAAAAGCCGCTGGAGGAGGTGAAGGCGGCGAAGGAGAAGAAAACTAAGGTTCCGAAAGAGAAGAAGCCGAAACAGGCTAAAACCGCAGCGCATCCTCCATATTTTCAGATGATTAAGGAGGCTTTAGTGGCGCTGAACGAGAAAGGAGGATCGAGCCCTTATGCTATAGCGAAGTACATGGAGGAGAAGCACAAGTCGGTGCTCCCCGTGAATTTCAAGAAGATTCTAGGTCTGCAATTGAAGAACCAAGCCGCAAGAGGAAAACTCTTGAAGATCAAGGCCTCGTACAAGCTATCCGAAACCGCAAAGAAAGAGAAGAAGGAGACGAAGGCCAACGCTGAGAAGAAAGAATCGCGTCCGAAACGTAGCAGAAGAGCAACCACGGCTGCTCCGACGAGCAAGAAAACTGAGGCGGTTAAAAAGGCCGTCAAGAAGGTTGGGCCGAAGAAGAGTAAGAAGGTGTCGACTCCCGCGAAGCCCAAACAGCCCAGGTCCATTAGGTCTCCGTCCAAGAGGGCCCGGAAAGTCACCGTTACTGCTGCTTGA 591 0.5245 MSDVAGEAPVPAPAVEKPLEEVKAAKEKKTKVPKEKKPKQAKTAAHPPYFQMIKEALVALNEKGGSSPYAIAKYMEEKHKSVLPVNFKKILGLQLKNQAARGKLLKIKASYKLSETAKKEKKETKANAEKKESRPKRSRRATTAAPTSKKTEAVKKAVKKVGPKKSKKVSTPAKPKQPRSIRSPSKRARKVTVTAA* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0762 196 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 45 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra11g0762 196 MobiDBLite consensus disorder prediction 104 196 - -
Vra11g0762 196 Coils Coil 111 134 - -
Vra11g0762 196 MobiDBLite consensus disorder prediction 1 48 - -
Vra11g0762 196 SMART h15plus2 43 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra11g0762 196 PRINTS Histone H5 signature 32 53 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra11g0762 196 PRINTS Histone H5 signature 59 76 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra11g0762 196 PRINTS Histone H5 signature 130 144 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra11g0762 196 PRINTS Histone H5 signature 167 184 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra11g0762 196 SUPERFAMILY "Winged helix" DNA-binding domain 42 125 IPR036390 -
Vra11g0762 196 PANTHER HISTONE H1 16 192 - -
Vra11g0762 196 MobiDBLite consensus disorder prediction 112 139 - -
Vra11g0762 196 Pfam linker histone H1 and H5 family 46 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra11g0762 196 CDD H15 43 114 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra11g0762 196 Gene3D - 41 126 IPR036388 -
Vra11g0762 196 PANTHER HISTONE H1 16 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0762 Vra-Chr11 6211191 6212168 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0762 32 113 Single Myb Histone (SMH) Gene Family AT1G72740 37.805 3.58e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0762 K11275 - gmx:100500169 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0762 11 6211191 6212168 Vra11g0762 11 6211191 6212168 ECH