Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0754 ATGGAGCAGCCGCTTCAACCGCAGCAGCCGGAGCCTGCGCCAAACACCGCTCGGGGTTTGGAGGACTCCCGCCTGCTGGGAGCCACTGTCGCGCCTGCTGGCTATGCTGATGTGGCCGAAAAAGATGTTAATAGTAGCGTGCCGAATTCGGAGGTTGCGGTCGTCGAAGGCGCCGTTTTGAAACGGAAGCGTGGTCGTCCGGCCAAGGGAGCCCCGAAAATGGTGCCTGTCGTGAGACAAAAGAAGGACGAGGAGGATGTTTGCTTCATTTGCTTCGACGGTGGGAGCCTCGTTCTCTGTGATCGGAGGGGTTGTCCTAAAGCGTATCATCCCACGTGTATTAAGCGAGACGAAGCGTTTTTTCGATCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCGCCTGTCAAAAGGCTTCGCATTATATGTGCTATACTTGCACGTACTCTTTGTGCAAGGGGTGCACAAAAGACGCTGATTTTGTTTGTGTCAGAGAGAATAAAGGTTTGTGCGGAATATGCATGAGGACTATAATGCTGATTGAGAACAGTGTCCAAGGAAACAAGGAAATGTGTGAAGTGGATTTCGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTTTATTGGATGTATTTGAAAGGGAAGCTATCTTTAACATTTGATGAGCTCCTACGGGCTAAAAACCCCTGGAAAGCTGTTGCTACTATGAGTTATAAGGTTCAAAGTCCCCATGAACTTTATCATCTTAGAGATGACAAAGGTTCTGGTTCCGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAGAACAAAAGACCCAAGAGACAGCCAAAACTTCTTGGCAAGGGTGATTGCCTGGACAGGATGGGTTCAGGTGGTGACAGAGTTACGTCTTTACCTGAATGCACAAAATGGGCATCGAAGGAGCTACTAGAGTTTGTTTCACATATGAAAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAGACTCTCTTGCTGGAGTATGTGAAGAAAAATAATCTTCGTGATCCTCAACAGATGTCTGAAATTGTTTGTGATTCTAGACTACTAAATTTGTTTGGAAAATCACGAGTCAGCCAAATTGAAATGCTAAAGCTCCTTGAATCCCATTTTCTTTTAAAACACAATGGACCAGCAGAAAATACTTTTGGAGCAGGAATTATTAATGCTGTTGCTAGTGAAGGGGATGCCATTGACACTCATAATAAACAGTTGATGTTAGTTAATGACAAGAGATGTAAAACACATAAAAATGCTGATGTTCTAGTTCCTCAAAATAACCCAAATGCATATGCTGCAATAGATGTTCACAATCTTAACTTGATCTACTTGCGGCGATGTCTGATGGAGAATCTAACTGAAGATATTGAAAAGATTCACGAGAAGGTTGTTGGTTCATTTGTGCGGATAAGAATCTCGAGCAGTGATCAAAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAACCATACAAAATTGGGACAAGAACAACTGATTTTAAGCTTGAAATTTTAAACTTAAACAGGAAGGAGGTCATACCCATTGCTGAAATTTCTAATCAGGAGTTCTCTGAGGATGAATGCAAGCGGTTGCGTCAGAGTATAAAATATGGGCTCTCAAAGAGATTGACTGTGGGAGAGATTCTAAACAAAGCATTAACACTTCAAGCAATTAGAGTTAATGATTTGCTGGAAGCTGAGATTTTGCGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCTTAGAAAAGAGGTTAAAGAATATGAGGAGAAGTTGCAGCTACTGAACTCTCCAGCGGAGCGACAACGCAGGCTGCAAGAAATTCCAGATGTACACTCTGACCCCAATTTAGATTCAATGTTTGAGTCTGATGAAGATGATGGAGAGTCAGATGAAAGGAAGCAAGATACCAATATATTTTCAAAATATCTTGGGTTTGATAGAAGAGAGAGGGGCTCTTTTTTTCCAAGAATTTCGAACAATGTCTTCAATGATGCAGGAGGCAAAACACAAGACTTGCCTGTTACCCGAGAACATGTTGGGAATATATGCACAGTAAAGAACTGTGACACAACTATCGAGGATGGCACTAATACGGTTGTGAAATCAGAAGTGTCTAGTGTTGCAGTGGACATTTCACCATCACTTATCCCAGTGGAGATACAGCAGCCACTTAATGAATTTTTGAATGATAGATCATGGAATTATCAAGATCCAACTGGGAAGGTTCAAGGGCCTTTTTCTATGTTGCAGCTGTACAAATGGAATGTAAGTGGAGGTTTCCCTCCAGATCTCAAAATATGGAGGATAGGTGAGAAACAGGATAACTCTATACTGTTAACGGATGCACTAAGTGTGAAGTGTTCCAAAAATGTGTCATTGCCATTCAACAACCCATTACTCTCTCTAGGGGTCAGTACATTGGATAATAAACATAATAGTCAGGATGCTGGGAAGAATGTAGTGAAGAATGGAATTTCTGCCGATGGGCAAATTATTGAACAGATCAAGGAACAAAAAGTGGATGATACCTCTACCCAGTCTGATGGTAAAGCTGAGCCTGTCAGGAGCAATGGATGGCTTGGGCCGCTGCATTTATACCCTTCACCATTGACAACTGCCATTACTGAGAAAATGAATGAAACTTCTGATAAATTAAGGAAAGATCATGGGATTGTGGGAAACTCTCAAGATAATGGAAATAATGGCTCAAACAGAACAGTGGATGGGCAGAGTAATAGTGGGCAAAGTTATCAGAAGCCATCAGATAGTGAAGAGAATGCAGGGCAATCTTCTGGACAGACCTGGAGACACCCTAATGTTAATAGCTCTTCGGATTGCCTGGTTGCCACGTCAGCTCATGTATCGGATAAAAAAACATCACCACATAAGCTGGGATTTGATTTACATAATTCTCCTTCCCCTCCAGCATGTAATACATCATCTGGACAGACCTGGAGACCCCCTCATGTTAATAGCCCTTCCAATTGCTTGGTTACCACGTCAGCTCATGCCTCTGGTACAAAAACATCACCACATAAGCTAGGATTTGATTTGCATAATCCTCCCTCCCCTCCTGCATGTAATACATCATCTGGACAGACCTGGAGTCACCCTACTGTAAATAGTTCTTCTGATTGCTTGGTTAACACACCAGCTCATGTTTCTGGTACAAAAACATCACCACATAAGCTGGGCTTTGATTTGCATAATCCTCCTTCCCCTCCAGCTTGTAATACATCTTCTGGACAGACTTGGAGACACTTTGATATAAATATTTCTACCAATTGCTTAGTTACCTCATCAACTCATGTTTCTGGTGTAAAAACATCACCGCATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAACTTGTAATACATCAACATGGCAGGCAATCATTGGCGAGCCCAATGATTTTGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGCGATGATTTGACTGAAGGTTCTAAAAATGATTGTCTCAGCTTCGTTGCAGACCTTGGCCCAATGCTTGATGCAGGTAAAGGTGATGCACTGAGCTCCACTGGAGATTTAAACTTACCATCTCAACCGACAGCCGCAGAGGAACCATTACGGCAAGCAGATGTACATCACCATCATCAAAGAATTTCTGATGGGCATTCTTCAAGAAGTTCTAAAGTTGAGGTGGGTACAAAAAACGCAAGTGTCTCGGGTAATCAATGGGATTCGGGCTCAGAAAATTCACATGTTGTTCCATCTCCTGCAACCTTGGGCCTGGCTATAGACACCACTTGGAGACTTGGGCTAGATAGTACACCTTTGGGGTGGAGTGGAATAGATCAAGGAAATACAAATGTGGGTTGGGGAGTAGGACAAACAGCAGTGCAGGAAACCAGGAGCTCAAATTCATACACTTCTGTAGTAACTCCAGGTTTTGGGGATAACCAAACAAGATATGGCAGTGATCGTTTTTCTGTGCCTAGAGATCGGGGTTCTCAAGGTCATGCTAGGGAATCAGGTTTTGGTAGAAGCAGAATTGCATTTAACAGGCAACCGTCGTATGGTGTTGGGAATGGAGGCTCGTATAGGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAGGGGGCATCCTGTGATTATTGGCACCCATGA 4290 0.4289 MEQPLQPQQPEPAPNTARGLEDSRLLGATVAPAGYADVAEKDVNSSVPNSEVAVVEGAVLKRKRGRPAKGAPKMVPVVRQKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPTCIKRDEAFFRSKAKWNCGWHICSACQKASHYMCYTCTYSLCKGCTKDADFVCVRENKGLCGICMRTIMLIENSVQGNKEMCEVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLRAKNPWKAVATMSYKVQSPHELYHLRDDKGSGSENSCIDIESNNLKNKRPKRQPKLLGKGDCLDRMGSGGDRVTSLPECTKWASKELLEFVSHMKNGDTSLLSQFDVQTLLLEYVKKNNLRDPQQMSEIVCDSRLLNLFGKSRVSQIEMLKLLESHFLLKHNGPAENTFGAGIINAVASEGDAIDTHNKQLMLVNDKRCKTHKNADVLVPQNNPNAYAAIDVHNLNLIYLRRCLMENLTEDIEKIHEKVVGSFVRIRISSSDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDFKLEILNLNRKEVIPIAEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKALTLQAIRVNDLLEAEILRLNHLRDRASEKGLRKEVKEYEEKLQLLNSPAERQRRLQEIPDVHSDPNLDSMFESDEDDGESDERKQDTNIFSKYLGFDRRERGSFFPRISNNVFNDAGGKTQDLPVTREHVGNICTVKNCDTTIEDGTNTVVKSEVSSVAVDISPSLIPVEIQQPLNEFLNDRSWNYQDPTGKVQGPFSMLQLYKWNVSGGFPPDLKIWRIGEKQDNSILLTDALSVKCSKNVSLPFNNPLLSLGVSTLDNKHNSQDAGKNVVKNGISADGQIIEQIKEQKVDDTSTQSDGKAEPVRSNGWLGPLHLYPSPLTTAITEKMNETSDKLRKDHGIVGNSQDNGNNGSNRTVDGQSNSGQSYQKPSDSEENAGQSSGQTWRHPNVNSSSDCLVATSAHVSDKKTSPHKLGFDLHNSPSPPACNTSSGQTWRPPHVNSPSNCLVTTSAHASGTKTSPHKLGFDLHNPPSPPACNTSSGQTWSHPTVNSSSDCLVNTPAHVSGTKTSPHKLGFDLHNPPSPPACNTSSGQTWRHFDINISTNCLVTSSTHVSGVKTSPHKLGFDLHNPPSPPTCNTSTWQAIIGEPNDFDESVSDLLAEVEAMESLGGLESPTSIMKCGDDLTEGSKNDCLSFVADLGPMLDAGKGDALSSTGDLNLPSQPTAAEEPLRQADVHHHHQRISDGHSSRSSKVEVGTKNASVSGNQWDSGSENSHVVPSPATLGLAIDTTWRLGLDSTPLGWSGIDQGNTNVGWGVGQTAVQETRSSNSYTSVVTPGFGDNQTRYGSDRFSVPRDRGSQGHARESGFGRSRIAFNRQPSYGVGNGGSYRPLPKGQRVCKFYESGYCKKGASCDYWHP* 1430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0754 1429 SMART rtf1 445 555 IPR004343 GO:0003677
Vra11g0754 1429 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 13 1429 - -
Vra11g0754 1429 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 13 1429 - -
Vra11g0754 1429 ProSiteProfiles Zinc finger C3H1-type profile. 1404 1429 IPR000571 GO:0046872
Vra11g0754 1429 MobiDBLite consensus disorder prediction 1 23 - -
Vra11g0754 1429 ProSiteProfiles GYF domain profile. 751 805 IPR003169 GO:0005515
Vra11g0754 1429 SUPERFAMILY FYVE/PHD zinc finger 83 138 IPR011011 -
Vra11g0754 1429 Gene3D - 753 809 IPR035445 -
Vra11g0754 1429 Gene3D SWIB/MDM2 domain 298 390 IPR036885 -
Vra11g0754 1429 ProSiteProfiles Zinc finger PHD-type profile. 85 151 IPR019787 -
Vra11g0754 1429 SMART PHD_3 87 133 IPR001965 -
Vra11g0754 1429 Gene3D - 446 575 IPR036128 GO:0003677
Vra11g0754 1429 MobiDBLite consensus disorder prediction 909 964 - -
Vra11g0754 1429 ProSiteProfiles Plus3 domain profile. 445 578 IPR004343 GO:0003677
Vra11g0754 1429 MobiDBLite consensus disorder prediction 1242 1260 - -
Vra11g0754 1429 ProSitePatterns Zinc finger PHD-type signature. 88 148 IPR019786 -
Vra11g0754 1429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 176 IPR013083 -
Vra11g0754 1429 CDD PHD5_NSD 87 132 - -
Vra11g0754 1429 Pfam GYF domain 754 795 IPR003169 GO:0005515
Vra11g0754 1429 Pfam SWIB/MDM2 domain 310 383 IPR003121 -
Vra11g0754 1429 ProSiteProfiles SWIB/MDM2 domain profile. 302 385 IPR003121 -
Vra11g0754 1429 MobiDBLite consensus disorder prediction 857 884 - -
Vra11g0754 1429 SMART swib_2 305 388 IPR019835 -
Vra11g0754 1429 CDD GYF 751 804 IPR003169 GO:0005515
Vra11g0754 1429 SUPERFAMILY CCCH zinc finger 1404 1428 IPR036855 GO:0046872
Vra11g0754 1429 MobiDBLite consensus disorder prediction 914 964 - -
Vra11g0754 1429 SMART gyf_5 752 807 IPR003169 GO:0005515
Vra11g0754 1429 CDD SWIB-MDM2_like 308 383 - -
Vra11g0754 1429 SUPERFAMILY SWIB/MDM2 domain 307 384 IPR036885 -
Vra11g0754 1429 MobiDBLite consensus disorder prediction 1242 1267 - -
Vra11g0754 1429 SUPERFAMILY GYF domain 744 805 IPR035445 -
Vra11g0754 1429 Coils Coil 579 599 - -
Vra11g0754 1429 Pfam Plus-3 domain 450 553 IPR004343 GO:0003677
Vra11g0754 1429 MobiDBLite consensus disorder prediction 626 654 - -
Vra11g0754 1429 SUPERFAMILY Plus3-like 446 574 IPR036128 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0754 Vra-Chr11 6126349 6133184 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0754 85 168 PHD Transcription Factor Family AT5G36670 32.558 2.25e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vra11g0754 Plus-3 3.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0754 - - vun:114173625 2754.16