Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0749 ATGCTTTACCAAACTCCCTATCCTCAACCTTTTCAATTTCATCCCTTGCCTTCTTCTTCCACCTCTCTTCTCCTCGCAACCTCATTCCTTCTCTCCTATCTCTCATCTTCCTCAGACATGGAGTGCATGGAGGCAGCTTTGAAAACCAATTTGAGGAAAGAAATGATGGTACAACTCAGTCCAGAAACCTTCATGGAGGAGTTCAGTGTGCAAAACGGAACCACTTGCGACGACTTTTTCGTCGACGGCCTCCTTGACTTCTCGCACGTCGATGAAGAACCAGAACAACAGCACAACGAACAACAAGACTCGGTTTCTCTATCCCTTCAGAAAGAAAACCCAAGCCAAGAGCCCTATGCTTTCAAACCCGATTATTCCTCTGTGCCCACCACCGAGCTCACCGTTCTGGCGGATGACGTGGCGGACTTTGAGTGGTTGTCTCATTTCGTGGAGGATTCCTTCTCGGAATTCTCTGCGGCGCTCCCCATCGTAACGGAGGCCAACCCGACGGGCCATACGGCGAAAGAGCCGAAGCCAGAACCGGAAAACCCGGTTTTCACCTTCAAAACCCCGGTTCAGACCAAGGCGAGAAGCAAGCGAAGCAGGAACGGTGTTCGTGTTTGGCCACTCGGTTCCCCTTCCTTCACCGAATCTTCCTCGAGCTCCACCACCACCACTTCTTCATCTTCCTCCTCCTCCCCTTCCAGCCCCTTGCTAATTTACACCAACTTCCCCCGTAACCTCGACCACGTCAACTCCGAGCCCAAACCAAATAAACCGAAGAAAAAACACTCTTCCGACAGTGCGGGCACCCTGGCGCCGCGACGGTGCAGTCACTGCGGCGTGCAGAAAACCCCTCAGTGGCGAACTGGGCCCCTCGGCCCAAAAACACTCTGTAACGCATGCGGGGTTCGGTTCAAATCGGGACGGCTCTTACCCGAATATAGGCCCGCTTGCAGCCCAACATTCTCCAGCGAATTGCACTCAAACCATCATCGTAAAGTACTGGAGATGCGGCAGAAGAAGGAGATGATGACTGGGATTGAAAATGGTTTTACCCCTGCTCCCGTTCCCAAATTTTGA 1083 0.5254 MLYQTPYPQPFQFHPLPSSSTSLLLATSFLLSYLSSSSDMECMEAALKTNLRKEMMVQLSPETFMEEFSVQNGTTCDDFFVDGLLDFSHVDEEPEQQHNEQQDSVSLSLQKENPSQEPYAFKPDYSSVPTTELTVLADDVADFEWLSHFVEDSFSEFSAALPIVTEANPTGHTAKEPKPEPENPVFTFKTPVQTKARSKRSRNGVRVWPLGSPSFTESSSSSTTTTSSSSSSSPSSPLLIYTNFPRNLDHVNSEPKPNKPKKKHSSDSAGTLAPRRCSHCGVQKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEMMTGIENGFTPAPVPKF* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0749 360 MobiDBLite consensus disorder prediction 92 125 - -
Vra11g0749 360 Gene3D - 270 345 IPR013088 GO:0006355|GO:0008270
Vra11g0749 360 ProSiteProfiles GATA-type zinc finger domain profile. 271 307 IPR000679 GO:0006355|GO:0043565
Vra11g0749 360 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 273 333 - -
Vra11g0749 360 MobiDBLite consensus disorder prediction 212 249 - -
Vra11g0749 360 MobiDBLite consensus disorder prediction 252 269 - -
Vra11g0749 360 PANTHER GATA TRANSCRIPTION FACTOR 40 347 - -
Vra11g0749 360 Pfam GATA zinc finger 277 311 IPR000679 GO:0006355|GO:0043565
Vra11g0749 360 PANTHER GATA TRANSCRIPTION FACTOR 40 347 - -
Vra11g0749 360 MobiDBLite consensus disorder prediction 100 115 - -
Vra11g0749 360 ProSitePatterns GATA-type zinc finger domain. 277 302 IPR000679 GO:0006355|GO:0043565
Vra11g0749 360 MobiDBLite consensus disorder prediction 169 276 - -
Vra11g0749 360 SMART GATA_3 271 325 IPR000679 GO:0006355|GO:0043565
Vra11g0749 360 CDD ZnF_GATA 276 324 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0749 Vra-Chr11 6061235 6062897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0749 44 360 C2C2-Gata Transcription Factor Family AT5G66320 46.610 1.95e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra11g0749 GATA 1.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0749 - - var:108335072 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0749 11 6061235 6062897 Vra11g0749 11 6061235 6062897 ECH
Vra11g0749 11 6061235 6062897 Vra7g0108 7 2023964 2025829 PCT