Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0734 ATGGCGGGTTTATTCTCACTAGGAGGTAGAGGGAACAACAACAACAACGAAGAGGAAATTCCTCCCCCTCCTGATACCTTATACTGGTATAACAACAAGAATGATGATGTTTCTTCTTATCACCGAGGAGGTAGCTTTGAGCTATGGAACCAACAGCAGTTACAGCACCAACAACAACACTTTATGGGTCAGCCTCCTCCACAACCACGACCTCTCTTTCACCAAGATCTATACTCCGCCTTGGGTGTTGGACCCAGCAGACCCTTATCCGACGATCAGTCATCGTCAAGATCCAGCTTCATGGTGGGAGGAAGCGGGAGTGGAAGCGGTGGAATTAGCTGTCAGGACTGTGGGAACCAAGCTAAAAAGGATTGCCCTCACATGCGGTGCAGAACATGCTGCAAGAGCCGGGGCTTCGATTGCCAGACCCATGTCAAGAGCACATGGGTTCCCGCTTCACGCCGCCGTGAGAGACAACAACAACTCTCTGCGTTGCAACAAAACATGGAAACTTCTGGAGACCTTCCCAGAAGACAGAGAGAAAGAGATCATAATAACCCCACCTCCTCTTCTCCACTTGCTTGCACTCGCTTGCCTTCCAATCCCTCCTCTTCAGGGTTAGAGGAGGTCAATTTCCCGGCGGTGGTGAGATCTTCTGCGGAGTTCAGGTGCGTACGTGTGAGCTCGATAGATGAGGCGGAGGAGGAGTATGCATACTCAACGGCTGTGAACATAGGAGGGCATGTGTTCAAAGGGATTTTATATGACTATGGTCCAGAAGGTAACAGTAACTTCTTGGGTGGTGCTGGGGAAAGCTCCTCCACTGGTGTTGGAGGTTTGAACCTCACTACTGGTGCCGTTGTCTCAGAGCCACTCCTTGATCCTTCTTCCTTGTATCCAGCTCCTCTTAACACCTTCATGCCTGGTAGTGGTACGCAATTCTTCCCTCACCCACGATCTTGA 963 0.5057 MAGLFSLGGRGNNNNNEEEIPPPPDTLYWYNNKNDDVSSYHRGGSFELWNQQQLQHQQQHFMGQPPPQPRPLFHQDLYSALGVGPSRPLSDDQSSSRSSFMVGGSGSGSGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERQQQLSALQQNMETSGDLPRRQRERDHNNPTSSSPLACTRLPSNPSSSGLEEVNFPAVVRSSAEFRCVRVSSIDEAEEEYAYSTAVNIGGHVFKGILYDYGPEGNSNFLGGAGESSSTGVGGLNLTTGAVVSEPLLDPSSLYPAPLNTFMPGSGTQFFPHPRS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0734 320 MobiDBLite consensus disorder prediction 52 105 - -
Vra11g0734 320 MobiDBLite consensus disorder prediction 151 207 - -
Vra11g0734 320 MobiDBLite consensus disorder prediction 88 105 - -
Vra11g0734 320 Pfam Domain of unknown function (DUF702) 111 260 - -
Vra11g0734 320 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 320 IPR007818 GO:0003700|GO:0006355
Vra11g0734 320 MobiDBLite consensus disorder prediction 1 32 - -
Vra11g0734 320 MobiDBLite consensus disorder prediction 186 207 - -
Vra11g0734 320 MobiDBLite consensus disorder prediction 151 173 - -
Vra11g0734 320 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 113 155 IPR006510 -
Vra11g0734 320 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 1 320 - -
Vra11g0734 320 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 212 259 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0734 Vra-Chr11 5924032 5926173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0734 1 309 C2H2 Transcription Factor Family AT5G66350 51.343 3.59e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vra11g0734 DUF702 1.7e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0734 - - gmx:100814589 479.559