Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0728 ATGAGATTGTATTCCAAGAACAGTCTTTCTTCTTTTAAATCAGCATCATCATGGTTCGAGGTGTATGCTGCCTTCTCCACACTCACAATTCTCCTAAGAACTGCAATCAATGATCTCATACCCCATCAGTTTCGATCCTACATAATCTTAAAGCTAGAGGGCTTCTTCTGCAAATACCGATCAAATAACAAAGTCTCTATAAAAATTAACCAGTTTTGGGATTGTGGAGAGCGTAATGAACTTTTCGAAGCTGCCTTGACGTACCTCCCCACCAAGATTACTCACACCTACAAATCGCTCAAAGTTGGCAGACGTCAAAACCATAAACACCTTGAGTTTGCAGTGGATGGAGGTGATGATGTGGTGGACAAATTTGAAGGCATGACGTTAACTTGGAAATTGAATGAGGGGTCCAAGGAGGATTCTAGGAATAAGAAGAATAATTTTGTATTAACCTTCAATGAGAAACTGAGACAGAGGGTACTGGATCGATATATCCCACATGTGATCAAAACATATGAGGCGATGAAAAATGAGAGAAGGATTTTAAAATTGTATTCTTGGTTAAATGACTTTTGGAATGAAAGTGACTTATCACATCCTTCCACATTTGACTCACTAGCCTTGAGTCCCGAGTTGAAGAAAGATATAATTGATGATTTGGATCGATTCTTGAGGAGGAAGGACCTTTACAAGAAAGTGGGGAAGGCTTGGAAGCGTGGCTACTTGTTGCATGGACCACCAGGAACTGGAAAATCTAGCCTTATTGCAGCCATGGCAAACTATTTAAAATTCGATGTGTTTGATTTGGAGCTTTCTTCGATCTTCTCAAACTCAGACCTTATGAGATGCTTGAAGGAAGCATCTAACCGTTGCATAATAGTGATTGAAGACATAGATTGCAACAAGGAGGTGCATGCAAGATCAAAACCAAATGGTACTTCAGAGGATCAAGATTCAGAGTCTGACAGTGAGGGTGCAAAGATGAAGTCAAGGAGCTTTATTCTGTCTGGTTTACTTAACTACATGGATGGCTTGAGCTCAAGTGGTGGAGAGGAGCGGATTATAATATTCACTACTAACCACAAAGAGAAAATTGACCCAGCATTGTTGCGCCCTGGTCGAATGGACATGCATATTCACATGTCCTTCCTCAAAGGCAAGGCCTTTCGAATGTTGGCTTCCAATTATTTGGGCATTCAAGGAAATCATCCACTCTTTCACCAAATTGACGATCTGTTAGAGAAAGTAGATATCACACCTGCAGTGGTAGGGGAGCAACTATTGAGATATGAGGATGCTCACCTTTGTTTGGAACAACTTGTTCAATTTCTCAAACAAAAGGTTAATGATAGTAATTCTGATTCAGTTGAGAGGGTTGTTTTCAGTAGGACCATTGACACCAATACTCCTAATTCATAG 1422 0.403 MRLYSKNSLSSFKSASSWFEVYAAFSTLTILLRTAINDLIPHQFRSYIILKLEGFFCKYRSNNKVSIKINQFWDCGERNELFEAALTYLPTKITHTYKSLKVGRRQNHKHLEFAVDGGDDVVDKFEGMTLTWKLNEGSKEDSRNKKNNFVLTFNEKLRQRVLDRYIPHVIKTYEAMKNERRILKLYSWLNDFWNESDLSHPSTFDSLALSPELKKDIIDDLDRFLRRKDLYKKVGKAWKRGYLLHGPPGTGKSSLIAAMANYLKFDVFDLELSSIFSNSDLMRCLKEASNRCIIVIEDIDCNKEVHARSKPNGTSEDQDSESDSEGAKMKSRSFILSGLLNYMDGLSSSGGEERIIIFTTNHKEKIDPALLRPGRMDMHIHMSFLKGKAFRMLASNYLGIQGNHPLFHQIDDLLEKVDITPAVVGEQLLRYEDAHLCLEQLVQFLKQKVNDSNSDSVERVVFSRTIDTNTPNS* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0728 473 Pfam Domain associated at C-terminal with AAA 40 134 IPR025753 -
Vra11g0728 473 CDD AAA 239 383 - -
Vra11g0728 473 Pfam ATPase family associated with various cellular activities (AAA) 243 382 IPR003959 GO:0005524|GO:0016887
Vra11g0728 473 Gene3D - 194 380 IPR027417 -
Vra11g0728 473 MobiDBLite consensus disorder prediction 306 329 - -
Vra11g0728 473 Gene3D - 381 454 - -
Vra11g0728 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 432 IPR027417 -
Vra11g0728 473 MobiDBLite consensus disorder prediction 306 328 - -
Vra11g0728 473 ProSitePatterns AAA-protein family signature. 354 372 IPR003960 GO:0005524|GO:0016887
Vra11g0728 473 SMART AAA_5 238 386 IPR003593 -
Vra11g0728 473 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 11 451 - -
Vra11g0728 473 PANTHER BCS1 AAA-TYPE ATPASE 11 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0728 Vra-Chr11 5866065 5867573 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0728 215 382 Calmodulin-binding Proteins AT3G56690 30.682 5.93e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0728 - K08900 gmx:100789094 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0728 11 5866065 5867573 Vra11g0728 11 5866065 5867573 ECH