Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0727 ATGGTATCCAACATGCGCAAACATTTTCCTTCGTTTGCATCAGCTTCGTCGTGGTTCGAGGTGTACGCTACATTATCCACATTCACCATGCTCATCAGAACTGCATTCAATGAACTCATACCCCATCAAATTCGATCCTTTCTTGTCTCAAAGCTAGAAGCCTTTTTCCATAGCCAACCAAATAATCAAATATCTCTCCGAATCAACGAATTCTGGCACGACCGGTGTGATGATAATGAACTTTTCCTTGCAGCGCTGGAGTACCTCCCCACCAGGATTACCAGCACCTACAAATCACTCAAAGTTGGTAAACTAGAAAACGAAAAGCACCTGAATCTGGCAGTGGATCCAAGCCAAGAGGTGGTGGACGAGTTTGAAGGCACCAAGTTCACTTGGAAGCTGGATGAGAATTCAGAGGAAAACTCGCGCCATATCTGGAAGGAAGCCTTTGTACTGACCTTCGACGAGAGGAACAGAGAGAGAGTGTTGGATCGGTATATCCCACACGTCCTTAAAACATACGAGGCCATGAAAAGTGAGAAGAGGATTCCGGAAATCCATTCCAGGAGGGGTTATCAATGGACCAACAGGAAGTTATCTCATCCTGCCACATTCGACACGCTGGCCTTGGATCCCGAGTTGAAGCAAGCTGTAGTTGATGATTTAGATCGGTTCCTGAAGAGGAAGGAATTCTACAAGAAGGTGGGAAAGCCTTGGAAACGTGGGTACTTGCTGTATGGACCTCCGGGAACAGGAAAATCTAGTCTCATTGCAGCCATTGCCAATCACTTGAAATTCGACGTGTATGATTTGGATTTATCTTCTATTAATTCTGATTCAGACCTGATGGAAGCCATGAGGGATATATCTCGCAGTTCCATCTTGGTGATTGAAGACATAGATTGCAACGAAGAGGTGCATGATCGATCAAATCCAAAACAAGATTCAGATATTGAGAAGGGTAGTGGGAAGTTTAATCTGTCGAATTTGCTGAATTTAGTTGATGGTTTAAGGTCAGGCGGCGGAGATGGGTGGGTTATAATATTCACTACTAACCACAAAGAGAAAATAGACCCGGCGTTGCTCCGCCCTGGTCGCATGGACATGCACATTCACTTGTCCTTTCTCAAAGGTAAGGCGTTTCAGATTATGGCTTCTAAGTATTTGGGTATTGAAGGACATCATCCAGTGGTTGAAGAGATCAAAGGAATGTTGGAGAAAACACAAGTCACCCCTGCAGTCGTAGGAGAGCATCTCATCAGAAATGAGGACCCTGACCTTGCTTTGGAAGCACTTGTTCAATTTCTCAAACAACAGATCAAGGAGGAGACCCAATGA 1338 0.4477 MVSNMRKHFPSFASASSWFEVYATLSTFTMLIRTAFNELIPHQIRSFLVSKLEAFFHSQPNNQISLRINEFWHDRCDDNELFLAALEYLPTRITSTYKSLKVGKLENEKHLNLAVDPSQEVVDEFEGTKFTWKLDENSEENSRHIWKEAFVLTFDERNRERVLDRYIPHVLKTYEAMKSEKRIPEIHSRRGYQWTNRKLSHPATFDTLALDPELKQAVVDDLDRFLKRKEFYKKVGKPWKRGYLLYGPPGTGKSSLIAAIANHLKFDVYDLDLSSINSDSDLMEAMRDISRSSILVIEDIDCNEEVHDRSNPKQDSDIEKGSGKFNLSNLLNLVDGLRSGGGDGWVIIFTTNHKEKIDPALLRPGRMDMHIHLSFLKGKAFQIMASKYLGIEGHHPVVEEIKGMLEKTQVTPAVVGEHLIRNEDPDLALEALVQFLKQQIKEETQ* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0727 445 SMART AAA_5 239 377 IPR003593 -
Vra11g0727 445 PANTHER BCS1 AAA-TYPE ATPASE 11 442 - -
Vra11g0727 445 Gene3D - 195 371 IPR027417 -
Vra11g0727 445 CDD AAA 240 374 - -
Vra11g0727 445 Pfam Domain associated at C-terminal with AAA 40 134 IPR025753 -
Vra11g0727 445 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 11 442 - -
Vra11g0727 445 Gene3D - 372 444 - -
Vra11g0727 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 422 IPR027417 -
Vra11g0727 445 Pfam ATPase family associated with various cellular activities (AAA) 244 373 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0727 Vra-Chr11 5857285 5858819 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0727 241 373 Calmodulin-binding Proteins AT3G56690 33.333 2.32e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0727 - K08900 gmx:100789094 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0727 11 5857285 5858819 Vra11g0727 11 5857285 5858819 ECH