Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0714 ATGGCTCAGTCACCGTCTTATTATAACCGATTTCCTCAGACTCCAAACTCAACTAAGAAGGGACGTAGTGGCTATGAGCCATCAGACACCGAGACCGAGTGGCAAGAGACTCCACGCCACGAACGAGAAAGAAGAAACTTCACTTTACAACGGAACAAGAGCCCCATGGCACTACACAGGAGGCACCCTTCCAGGGTTGAACATGAAATCTCATCAGCTTCAACAACTTCAGCTCCACGTAGAAGACACAATAGCAAATCACCCTATAAGCTCCGCGTAGCAGAAGATGTTGCTGCTTCATCATCGCCCCTAACAGGTTTGGATACACGCAGAAATATCAGTCCCTTGCCGAGACCTGACCTTGGAAGAACTGTGTCCCCTTTCAGGGAGCAAAGAACCGAGAAGCCACACTACAAGAGATCAGTGACTGCTCCCAGGTTGAGGATTCAAGAGAGCAACCATGGAGGGATAATCAATGACACTGTTCTACAGAAAAGAGAAGATTCTCCTTTCAAATCGCCTTCGGTTGGAAAAATCAACGAAATGATAGCACAGGTGAAGCTATCTAATGATCCCAGAAGTGATTATTCATCAGTGCTTGAAAGCACTGATTCCTTTCAACCCGGTGACCTTTTCTTTTCTCGTGAATGCAATGCCTTGCAAGGGAGGAATTCTTCGTTGCCGAAACGCATCCAACAGAGTGAGTATTTCAGTCCAATGCCAACGGTGAACTCCACGAGAACACCATCTGAAAGCAAAGGAAATAACGGTGATCTTAACATGAATATGAATATTTTGTCTCAATCAACCACGGGTTTGAGTTCTGCTGCCACGAGTAGAAAGGGAAGTGTCGCTGGTAAGACAAGTAGTGTAACAAGCGAGGGTAGTGGAAAGACGACCGCAAGCATGAGGAAATTCACAGCTAACAGAAATAAGAGCCAGAAAGATACATGGTTTGCTTGCATGAGAACAGGTAACTGTAGAACCACTAGAAAATCTCCTGAACGTCGACCCATTGACGAATCTTCTTACATCGAGAGAGCAGTGGTAGTGGAAAGCCTCCCACAATTCTTGGCAGATAAGCACCAACCTGCTTCACTTGATGGCTTCATTTGCAACAGACAAGAAGCTCAACTTCTGAAGGAATTGGTGTCTCATGGCTCTTGCCCTCATATTTTGCTCAAAGGACCCTCTGGTTCCGGGAAAAGAGAGCTAGCAATGGCTCTTCTTAGAGAAATATATGGGGATGCATGTTATAATGACCAAAGGCTTAAGAAAGTCTCTGTACCCATAACATCCAGTCCTCATCACATGGAGCTTGATGTAAATTCAGAACCAAATGCTAAATATGCTTTAATGGGATTGATCAAAGAAATAAGCAATATATATGCTATTGCCCCTGAAGTAAGCAATATTAATTTCAAGTCAGATTTTAAAGTAATAGTTCTTTATGATGTCCACAAAGCTGTAGATAACATTCAGCACATTATCAAATGGATAGTAGACCGCTATTCTGATATATGCAAATTAGTACTCTGCTGTGAAGATGATGCAGACATCATTGAAGCTGTGAAAAATCGGTTCAAAACTGTACAAGTTGATGCTCCTCAAACTCACCAAATTGTTGAGGTTCTTATGCAGATAGCAAAGAATGAGAAATTTGATCTGTCCATGAACTTTGCTGCGAAGATTGCTACAAAATCTAAGCAGAACCTCAGAAAAGCAATCATGGCTCTGGAAGCATGCAAAGCACACAACTATCCATTTTCAGAAGAACAACCAATTTCAGTTGTATGGGAGGAGATCGTAATAGAAGTTGCCACAGAGATCCTAGCTGATCCATCATATTCACGCTTACTCTCAATTCGAGGGAAATTTCAAATGCTTCTCTTGGATTTTGTCCAGCCGAAATTGGTTCTCCTGAAACTCGTAGAACATCTCCTAAAAAGAATTGATGGCAGCTTAAAGAGGGAGCTATATTACTGGCATGCCTATTATGACAGAAGACTCCCACCAGGAATAACAGCTTTACTAAAGTTAGAAGAATTTGTGGCTAAGTTCATGAGCATGTGCAGAAAAAACTCTGGCAATCGGCAATATGTGTAG 2106 0.4255 MAQSPSYYNRFPQTPNSTKKGRSGYEPSDTETEWQETPRHERERRNFTLQRNKSPMALHRRHPSRVEHEISSASTTSAPRRRHNSKSPYKLRVAEDVAASSSPLTGLDTRRNISPLPRPDLGRTVSPFREQRTEKPHYKRSVTAPRLRIQESNHGGIINDTVLQKREDSPFKSPSVGKINEMIAQVKLSNDPRSDYSSVLESTDSFQPGDLFFSRECNALQGRNSSLPKRIQQSEYFSPMPTVNSTRTPSESKGNNGDLNMNMNILSQSTTGLSSAATSRKGSVAGKTSSVTSEGSGKTTASMRKFTANRNKSQKDTWFACMRTGNCRTTRKSPERRPIDESSYIERAVVVESLPQFLADKHQPASLDGFICNRQEAQLLKELVSHGSCPHILLKGPSGSGKRELAMALLREIYGDACYNDQRLKKVSVPITSSPHHMELDVNSEPNAKYALMGLIKEISNIYAIAPEVSNINFKSDFKVIVLYDVHKAVDNIQHIIKWIVDRYSDICKLVLCCEDDADIIEAVKNRFKTVQVDAPQTHQIVEVLMQIAKNEKFDLSMNFAAKIATKSKQNLRKAIMALEACKAHNYPFSEEQPISVVWEEIVIEVATEILADPSYSRLLSIRGKFQMLLLDFVQPKLVLLKLVEHLLKRIDGSLKRELYYWHAYYDRRLPPGITALLKLEEFVAKFMSMCRKNSGNRQYV* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0714 701 SUPERFAMILY post-AAA+ oligomerization domain-like 598 690 IPR008921 GO:0003677|GO:0006260
Vra11g0714 701 Gene3D - 538 595 - -
Vra11g0714 701 Gene3D - 598 691 - -
Vra11g0714 701 MobiDBLite consensus disorder prediction 270 301 - -
Vra11g0714 701 PANTHER OS02G0704966 PROTEIN 166 700 - -
Vra11g0714 701 MobiDBLite consensus disorder prediction 1 23 - -
Vra11g0714 701 MobiDBLite consensus disorder prediction 125 140 - -
Vra11g0714 701 CDD AAA 373 413 - -
Vra11g0714 701 Gene3D - 356 536 IPR027417 -
Vra11g0714 701 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 166 700 - -
Vra11g0714 701 MobiDBLite consensus disorder prediction 1 140 - -
Vra11g0714 701 MobiDBLite consensus disorder prediction 24 49 - -
Vra11g0714 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 584 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0714 Vra-Chr11 5756165 5760320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0714 359 690 Core DNA Replication Machinery Family AT5G27740 39.595 2.43e-75 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0714 K10756 - gmx:100795321 1185.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0714 11 5756165 5760320 Vra11g0714 11 5756165 5760320 ECH