Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0706 ATGAATGATTTGATGACAAAATCGTTCCTAAGTTATGTGGAACTTAAGAAACAGGCACAGAAGGACCGTGAAGGCGATCTTGACATTGAGGCAGGGAAACTCTACCCCACGGAAGACCGCAGCCTCTCTCAGTTCTTTCAAGAAGTTGAAGCAATCAAGGTTGAAATGGAAGAGATCACCAATCTCTTATTTGATCTTCAACAACTCAATGAAGAGGCAAAGTGCACCCACAGTGCCAAAGTTCTTCGTGGCCTAAGGGACCGGATGGAGTCTGACATGGTTGCCGTGCTTCGCAAGGCACGGATTATCAAGGAAAAGCTTGAGGTTCTTGACAAATCCAACACGGTCAACCATAGGATGTCGGATTCCTACAAAGACGGGAGCCCAATTTACAGGACCAGAATTTCTGTCACAAATGGTTTGAGGGTCAAGCTTAGGGCCATGATGAATGATTTTCAGTCATTGAGAGACCAAATTCTATCTGATCACAAGGAAGATTTGAAGAGAAGGTACTATACAGCAACGGGTGAGGTTCCCACTGAAGAGGTCATGGAGAAGATGGTTTCTGGGAGTCTCAAAGTGGAGTTTTTGGCTGGGAAAACGGATGCAGAATTGGACACTCAAGTTAGGCATGAGGCTGTGATGGACATCCAGAGGAGTTTGAATAAGCTTCACCAGGTTTTTCTTGATATGGCTGTTCTGGTTGAGACACAGGGAGAAAGCGTGGATAACATTGAGGATAATGTGGCTAATGCGGCTAACTTCATCCATGGTGGAACTAATAGTCTCTACTATGCCAGCCAGATGAAGAGGAAGAACAGAAAGTGGGTCTGTTGGGTTTTCGCTGTGGGGCTGATTATACTACTCGTATGCATCGTTGCAATGTTGTCTTCTTGA 897 0.4515 MNDLMTKSFLSYVELKKQAQKDREGDLDIEAGKLYPTEDRSLSQFFQEVEAIKVEMEEITNLLFDLQQLNEEAKCTHSAKVLRGLRDRMESDMVAVLRKARIIKEKLEVLDKSNTVNHRMSDSYKDGSPIYRTRISVTNGLRVKLRAMMNDFQSLRDQILSDHKEDLKRRYYTATGEVPTEEVMEKMVSGSLKVEFLAGKTDAELDTQVRHEAVMDIQRSLNKLHQVFLDMAVLVETQGESVDNIEDNVANAANFIHGGTNSLYYASQMKRKNRKWVCWVFAVGLIILLVCIVAMLSS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0706 298 PANTHER SYNTAXIN-112 3 294 - -
Vra11g0706 298 CDD SNARE_syntaxin1-like 206 263 - -
Vra11g0706 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Vra11g0706 298 Pfam Syntaxin 44 239 IPR006011 GO:0016020
Vra11g0706 298 SMART tSNARE_6 199 266 IPR000727 -
Vra11g0706 298 Coils Coil 52 72 - -
Vra11g0706 298 CDD SynN 42 192 IPR006011 GO:0016020
Vra11g0706 298 Gene3D - 200 297 - -
Vra11g0706 298 Pfam SNARE domain 242 290 IPR000727 -
Vra11g0706 298 SUPERFAMILY t-snare proteins 40 259 IPR010989 GO:0016020|GO:0016192
Vra11g0706 298 PANTHER SYNTAXIN 3 294 IPR045242 -
Vra11g0706 298 SMART SynN_4 37 164 IPR006011 GO:0016020
Vra11g0706 298 Gene3D - 37 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0706 Vra-Chr11 5689924 5691612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0706 1 298 SNARE and Associated Proteins AT2G18260 58.306 2.27e-126 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0706 K08486 - gmx:112997615 514.227