Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0700 ATGTCGTTGAAAAGCATAGTAAGAGAACTGAAGGAGATGAGAGATGGGATTGGCAACATGTCAAAGCGAGGTGTGGAGAGCAGGCGTTGGAATGGTCGGACAAAGTCACATGTTGCTCCAGATATCACTCTAACTTCACTTGAACCCATTCAGCAAGGGCAGTGGGCGCATTTACCCCCTGAGTTGCTTCTGGACATAATAAATAGGGTGGAAGAGAGCGAGACTACCTGGCCTGCACGTGCCGTTGTTGTTCATTGTGGTTCAGTTTGTAAATCTTGGAGGGATGTTACCAAAGAAATTGCCAAGACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCGTTGAAACAGCCCGGGCCACGGGATTCTCCAATACAGTGCTTTATCAGAAGGAACAGAGAAACTTCTACATATCTATTATACATTGGCCTGGTGCCATCGGAGAACGAGACTGATAAGTTGCTACTAGCTGCCAAAAAGGTAAGAAGGGCAACAGGGACAGACTTTATTGTGTCTTTGGTTGCAGATGACTTTTCTCGCTCCAGCAACACATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATTTATGACAGCCAACCACCACACGGAGCTGCAATTCAACAAGATAGTGGGTCTAGTAGGAGATTTCATTCGAAGCAGGCATCTCCTAGAGTTTCAGCATTTAACTATGTTGTTGGCACCATTGCCTATGAGTTGAATGTTCTCCGTGCAAGAGGGCCAAGGAGAATGCATTGTACCATGAACTCCATACCTGTCTCAGCTATTCAGGAAGGGGGCACTGCTCCAACACCTACGTCTTTCCCTCAAGTCGTTGACAAGCCTTTTTCTCCCTCACCAGCTCTAAAAGGAAAAGGTCCAAGTACAGATTTAAATAATGTAAACCTCCCTAAGTTACCAGTATCTAGTCAAGGGTCAGCTGAGCCCATGGTACTAAAAAATAAGGCTCCTAGATGGCACGAGCAACTGCAATGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTGGCTTCTGTTAAAAACTTTCAACTTGTGGCCGCTGTTGATCCATCTCACAATGTTTCAGCTGCAGAACAAGAAAAAGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACTATGGATTACCGTTATCCGCTCTCTGCCTTCCAAGCCTTTGCCATATGTCTGAGCAGCTTTGACACCAAACCAGCTTGTGAATGA 1245 0.4474 MSLKSIVRELKEMRDGIGNMSKRGVESRRWNGRTKSHVAPDITLTSLEPIQQGQWAHLPPELLLDIINRVEESETTWPARAVVVHCGSVCKSWRDVTKEIAKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNRETSTYLLYIGLVPSENETDKLLLAAKKVRRATGTDFIVSLVADDFSRSSNTYVGKLRSNFLGTKFTIYDSQPPHGAAIQQDSGSSRRFHSKQASPRVSAFNYVVGTIAYELNVLRARGPRRMHCTMNSIPVSAIQEGGTAPTPTSFPQVVDKPFSPSPALKGKGPSTDLNNVNLPKLPVSSQGSAEPMVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0700 414 MobiDBLite consensus disorder prediction 269 285 - -
Vra11g0700 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Vra11g0700 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Vra11g0700 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Vra11g0700 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Vra11g0700 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Vra11g0700 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Vra11g0700 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Vra11g0700 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Vra11g0700 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Vra11g0700 414 MobiDBLite consensus disorder prediction 269 307 - -
Vra11g0700 414 Pfam Tub family 116 409 IPR000007 -
Vra11g0700 414 Gene3D - 48 104 - -
Vra11g0700 414 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 414 - -
Vra11g0700 414 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515
Vra11g0700 414 PANTHER TUBBY-RELATED 1 414 - -
Vra11g0700 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Vra11g0700 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Vra11g0700 414 Pfam F-box domain 55 100 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0700 Vra-Chr11 5663561 5666457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0700 1 414 TUB Transcription Factor Family AT2G18280 64.337 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vra11g0700 Tub 1.5e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0700 K19600 - gmx:100778290 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0700 11 5663561 5666457 Vra11g0700 11 5663561 5666457 ECH
Vra11g0700 11 5663561 5666457 Vra7g0066 7 1411033 1418794 PCT