Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0699 ATGAGAATGGACATTGGTGAAGGGGAGGCCTTACTAAATCCCCGCTCCTTTAAGGTGCATGGTAAAATGTGCACAGAACTTGCAAAATTAGTGGATAGAATCTCAAGAATAGTTCCAGACATAGAGGCGGCACGGCCAGGGTTCTCATCAGGAATAGAGTCTCTGTGTTTGCTGAACAACACAATTGAAAAAGCCAAAGTACTCGTGCAGCATTGCTCTGAATGCAGCAAACTCTACCTGGTTATGACAGGGGATACAGTACTCTCAAGATGCCTAAAGACAACACGATTATTAGAGAAAAGCTTAATCCAAATTCAGAACATGGTTCCTGTTATGTTGGCGGTGAAGATTTCTAGAATAATTCATGATCTTGAGTGTACGAGATTTGTTCTGGACCCCGATGAAGAAGAGGCTGGGAGGGTTGTGAAAGAGTTGCTCACTTCAACTTCAGATTCAGTCGACGATTCTGAAGTTAAAGCTCTTCAGTCTGTGGCATCGCGACTGAAAATAACATCAGCGAGGGCCATCGTAACAGAGCAACGATCTATTAGGAAGTTGTTGGATAAACTTGGACCAAATGAAGTGACAAAGAAAAGGATACTGAAATATCTTCTGCTTCTACTGAAAAAGCATGCAAAGCTCCTGGTGGAAGAACATGAGGAGAGGGTCTATTCTTCCGAAGAACATGTTGCAACGGAGAACTCTTATGACGATTCTTTACGAAGCCATCATGTGGAGTCAGACCAAAGCTTAAACTATGATCAGTATATAACTCACACCAGTGAGTTAGGTGGAGTTGACCTCCCTGAGCAATATAAATGCCCAATATCCTCAAGGTTGATGTATGATCCTGTTATCATTGAATCAGGAGTAACATATGAAAGGATGTGGATAAAAAAGTGGTTCGATAAGGGTAACGATATATGCCCCAAAACCGGAAAGAAACTAATCCATACGGCTTTAACTCCAAATGTGGCCATGAAGGACTTAATATCAAAGTGGTGCAGAAAAAATGGAGTCTCCATTCCAGATCCTAGTAGGCAAGCAGAAGATATTTCCTCATGGGAAGCTTCAAGCACTTCCATTAATAGTATAGGAAGTTATTTCAATGATTTCAACCCGCCAGTGGATCTTAGTAACATGTCAATTGGGTCACTTGATGCTAGTTTTAGTTCAGATGCCTCGCATGGTAGGACCACTCGTGGCTCTATGCTGATCAGGAGCAGTGACAATTCTGGAAGACATCAAGTTCATACAGAGATACATGATACTGATTTGATGCTCTTGCCTCAACTCGGTGATCTTCAATGGGATTCTCAATGCAAGGTCATTCAAGACCTGAAAGATCACTTGAAAAGCAATAGCCAAGCTTTTGTTTCTGTATCTGCAGACAATTTGCTTGAACCACTCCTCAGATTTCTGAACAGTGCATATGATCTGCGTGATGTTCAAGCGTTGAGAGCTGGAACTCAACTTCTGTTGGAGTTTGTGAACAACTGCAGAAATGGTAATACTAACTGGAATGAAGAGACGTTCATTATGTTGGCAAGTTTTCTTGATTCAGAAGCGACAGAAGAAATTCTTGCCATACTGGAAGAACTGTCAGGACGTTGGTATAATGCACCTAAAATTGCAGCATCCAGTGCTCTCAATTCTATTTTAAGCATACTCGATTTCGAAAAAAAAGGTTTCCAACAACAAGCTATTAGAATAATGTACAATTTGTCTTTCATTGGCGAAGTATGTCCCCGCATGCTATCACTCAAGTGCATCCCAAAATTGCTGCCATTTTTCGAAGACAGAAACCTTTTGAGATACTGCATACGTATACTGAAAAATCTTTGTGATACTGAAGAGGGTAGGAATTCTGTTGCTGAAACAAAGGGGTGCATAAGTTCGGTTACTGAAATACTTAATACCGGCAATAATGAAGAACAAGAACACGCACTGGCAGTTTTAGTCTCTCTATGCTCTCATGTGGATTACTTGAAGTTAGTAATGAGTGAGCATGACAATATCATACCTTCTCTTTTCTTGATCTCCCAGAATGGAAACGATAAAGGAAAGAAAAGTGCGTTGGAATTGATCCATCTTTTGGATGATGTCAACATTGGTGACAATAAAGATTGCCCTGAGCCAAATACCAGCAACTCTTGTCGAGATTCTAACACTCACCCACCTGAAGAAAATAGACCACTGAAGAAATCCACGTTTCTGAAGAAACTATCACCATTCTCAAAGTCCAGTTCACATGGATCAAAATCCAAAAGATGA 2274 0.4077 MRMDIGEGEALLNPRSFKVHGKMCTELAKLVDRISRIVPDIEAARPGFSSGIESLCLLNNTIEKAKVLVQHCSECSKLYLVMTGDTVLSRCLKTTRLLEKSLIQIQNMVPVMLAVKISRIIHDLECTRFVLDPDEEEAGRVVKELLTSTSDSVDDSEVKALQSVASRLKITSARAIVTEQRSIRKLLDKLGPNEVTKKRILKYLLLLLKKHAKLLVEEHEERVYSSEEHVATENSYDDSLRSHHVESDQSLNYDQYITHTSELGGVDLPEQYKCPISSRLMYDPVIIESGVTYERMWIKKWFDKGNDICPKTGKKLIHTALTPNVAMKDLISKWCRKNGVSIPDPSRQAEDISSWEASSTSINSIGSYFNDFNPPVDLSNMSIGSLDASFSSDASHGRTTRGSMLIRSSDNSGRHQVHTEIHDTDLMLLPQLGDLQWDSQCKVIQDLKDHLKSNSQAFVSVSADNLLEPLLRFLNSAYDLRDVQALRAGTQLLLEFVNNCRNGNTNWNEETFIMLASFLDSEATEEILAILEELSGRWYNAPKIAASSALNSILSILDFEKKGFQQQAIRIMYNLSFIGEVCPRMLSLKCIPKLLPFFEDRNLLRYCIRILKNLCDTEEGRNSVAETKGCISSVTEILNTGNNEEQEHALAVLVSLCSHVDYLKLVMSEHDNIIPSLFLISQNGNDKGKKSALELIHLLDDVNIGDNKDCPEPNTSNSCRDSNTHPPEENRPLKKSTFLKKLSPFSKSSSHGSKSKR* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0699 757 SUPERFAMILY RING/U-box 259 345 - -
Vra11g0699 757 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842|GO:0016567
Vra11g0699 757 SUPERFAMILY ARM repeat 428 699 IPR016024 -
Vra11g0699 757 Gene3D - 427 751 IPR011989 -
Vra11g0699 757 MobiDBLite consensus disorder prediction 709 723 - -
Vra11g0699 757 Pfam U-box domain 269 338 IPR003613 GO:0004842|GO:0016567
Vra11g0699 757 MobiDBLite consensus disorder prediction 706 757 - -
Vra11g0699 757 MobiDBLite consensus disorder prediction 390 412 - -
Vra11g0699 757 CDD RING-Ubox_PUB 272 314 IPR045210 -
Vra11g0699 757 MobiDBLite consensus disorder prediction 390 417 - -
Vra11g0699 757 Pfam Kinesin-associated protein (KAP) 482 657 - -
Vra11g0699 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 342 IPR013083 -
Vra11g0699 757 PANTHER U BOX DOMAIN-CONTAINING 9 739 - -
Vra11g0699 757 SMART Ubox_2 271 334 IPR003613 GO:0004842|GO:0016567
Vra11g0699 757 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0699 Vra-Chr11 5653387 5659071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0699 1 745 U-box Gene Family AT4G36550 37.154 6.27e-143 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0699 - - gmx:100775550 1105.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0699 11 5653387 5659071 Vra11g0699 11 5653387 5659071 ECH
Vra11g0699 11 5653387 5659071 Vra7g0063 7 1390604 1396210 PCT