Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0693 ATGGAAACCCACACAAAGCAAAGTCTGATGGAAATGGGAGGCCAAGATAAGGAAATAGAGATACCAACAAGTTTAGGTTACAACCTTCACAACAGAGATTCTTCTTCTTCCTCTTCCAAGCTCTCTTCTCCAACACTTGGTGAAAGAAGTACTACCACTCATCATGATCATCATCGTGATCAACTTCATCATCATCAAACTCACACATTAATCTTCAACGACCCACCTCACCATAATCTCTACCCACCACCACCTCCTCCTCCTCTTGCACCTCGTCAACCTCATACACTCACACCAGATCCAGATCTAACCACCCCAATTCCTCCCACATCGAATCCTCTAACAACACCACACCCCCACATAACAACAATACCACCACCACCACCACCACCTGCAGCAACAACAACAACAACCTCAACCCCGTCGATCAGGTACCGAGAATGTCTTCGGAACCACGCCGCAAGCATGGGGAGCCACGTGGTCGATGGCTGTGGAGAGTTCATGGCAAGTGGCGAAGAAGGTACGCCGGAATCACTAAGATGCGCCGCGTGTGAGTGTCACCGCAACTTCCACAGGAAAGAGGTTGACGGGGAGTTACAGCCACAACAACCACCGCCACTGTCACTGGTACAGCAACAGCAACAACAACATGTTCCCAATTATCACAGCTACTACCCGAACAAGCACAATGGGCACCTTCACTACCCTACTCCCTCTCCTTCTTCCCTCCTCCATCATCACAGATTGGTTGGTAGCAGTGGTACACCGAGTTTGGTTCCCCCAGTGATGATGGCCTTTGGAGGCCCAGCTGAGTCCTCAAGTGAAGATCTCAACATGTTTCAGTCCAACACCGGAGGAGCACAGTTATCAGTGCAGGCGCCACTTTCTTCCAAGAAGAGGTTTAGGACTAAATTCTCTCAGCACCAGAAGGATAGGATGATGGAGTTTGCTGAAAAGATTGGTTGGAAGATTCAGAAACATAATGAACAGGAGGTACAGCAGTTTTGTTCTCAAGCGGGCGTAAAGAGACAAGTTTTCAAGGTTTGGATGCACAATAACAAGAAGCACCCAATGTAA 1077 0.4847 METHTKQSLMEMGGQDKEIEIPTSLGYNLHNRDSSSSSSKLSSPTLGERSTTTHHDHHRDQLHHHQTHTLIFNDPPHHNLYPPPPPPPLAPRQPHTLTPDPDLTTPIPPTSNPLTTPHPHITTIPPPPPPPAATTTTTSTPSIRYRECLRNHAASMGSHVVDGCGEFMASGEEGTPESLRCAACECHRNFHRKEVDGELQPQQPPPLSLVQQQQQQHVPNYHSYYPNKHNGHLHYPTPSPSSLLHHHRLVGSSGTPSLVPPVMMAFGGPAESSSEDLNMFQSNTGGAQLSVQAPLSSKKRFRTKFSQHQKDRMMEFAEKIGWKIQKHNEQEVQQFCSQAGVKRQVFKVWMHNNKKHPM* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0693 358 MobiDBLite consensus disorder prediction 50 71 - -
Vra11g0693 358 SUPERFAMILY Homeodomain-like 287 354 IPR009057 -
Vra11g0693 358 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 298 355 IPR006455 -
Vra11g0693 358 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 145 194 IPR006456 -
Vra11g0693 358 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 144 195 IPR006456 -
Vra11g0693 358 Pfam ZF-HD protein dimerisation region 143 195 IPR006456 -
Vra11g0693 358 MobiDBLite consensus disorder prediction 77 135 - -
Vra11g0693 358 Gene3D - 286 357 - -
Vra11g0693 358 MobiDBLite consensus disorder prediction 1 140 - -
Vra11g0693 358 MobiDBLite consensus disorder prediction 27 49 - -
Vra11g0693 358 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 63 355 - -
Vra11g0693 358 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 63 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0693 Vra-Chr11 5603199 5605965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0693 77 355 ZF-HD Transcription Factor Family AT2G18350 43.110 1.48e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vra11g0693 ZF-HD_dimer 2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0693 - - vra:106776405 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0693 11 5603199 5605965 Vra11g0693 11 5603199 5605965 ECH
Vra11g0693 11 5603199 5605965 Vra7g0060 7 1337519 1339333 PCT