Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0691 ATGGGACCCTGTACATGTGGCATCTCCCACGGCCAAACCACCTCCTTCTCAATGCCCTTCTCGGGGCCAAACCACAAACCACCCTACCAAGATTCCGACATTTACGATTATTCCTTCACCTCCGCCTCTTCTTCTTCCTCTTCCGTCGACTGCACCCTTTCCCTCGGTACCCCATCCACCCGTTTCTCCCAAGACGACCAAAAACCTACTCGCCACCAACGTAGATCCGTTTCTAACTTCTGTTGGGACTTACTACAATCCAAACACAACCCTCAATCCCAAACCAAATCCTCCAGAACCTCCAATACCACCTCAAACACCGACCCTCTCATCGCTCGCCGCTGCGCCAATTGTGACACCACCTCAACTCCCCTTTGGAGAAATGGCCCCCGAGGCCCCAAGTCGCTGTGCAATGCGTGTGGGATTAGATTCAAGAAGGAGGAAAGAAGGGCGAGTGCCGCGGCCGCACCGCCGCAGCAGGCTTCTGGCGGCATGATGGAATCGGCGCAAGTGTACAACAACTCGTGGTACGCACACCCGCAGAGTCAGAAGATGCAGTGTTTCTCGCAGGGGATGGGGAGCGAGTTCCGTTTCGCGGATGACGGCGATCGAGACGCCGATAGCGGCATTCCGTTTCTCTCCTGGAGACTCAACGTGGCAGACAGAACGAGCCTCGTCCACGACTTCACAAGATGA 696 0.5575 MGPCTCGISHGQTTSFSMPFSGPNHKPPYQDSDIYDYSFTSASSSSSSVDCTLSLGTPSTRFSQDDQKPTRHQRRSVSNFCWDLLQSKHNPQSQTKSSRTSNTTSNTDPLIARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAAPPQQASGGMMESAQVYNNSWYAHPQSQKMQCFSQGMGSEFRFADDGDRDADSGIPFLSWRLNVADRTSLVHDFTR* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0691 231 ProSiteProfiles GATA-type zinc finger domain profile. 109 145 IPR000679 GO:0006355|GO:0043565
Vra11g0691 231 ProSitePatterns GATA-type zinc finger domain. 115 140 IPR000679 GO:0006355|GO:0043565
Vra11g0691 231 Gene3D - 111 171 IPR013088 GO:0006355|GO:0008270
Vra11g0691 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 112 151 - -
Vra11g0691 231 Pfam GATA zinc finger 115 149 IPR000679 GO:0006355|GO:0043565
Vra11g0691 231 CDD ZnF_GATA 114 146 IPR000679 GO:0006355|GO:0043565
Vra11g0691 231 PANTHER GATA TRANSCRIPTION FACTOR 18 2 230 IPR044272 GO:0003700|GO:0009908
Vra11g0691 231 SMART GATA_3 109 161 IPR000679 GO:0006355|GO:0043565
Vra11g0691 231 MobiDBLite consensus disorder prediction 88 108 - -
Vra11g0691 231 PANTHER GATA TRANSCRIPTION FACTOR 18 2 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0691 Vra-Chr11 5578238 5580210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0691 15 231 C2C2-Gata Transcription Factor Family AT3G50870 44.815 5.26e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra11g0691 GATA 5.4e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0691 - - gmx:100790571 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0691 11 5578238 5580210 Vra11g0691 11 5578238 5580210 ECH
Vra11g0691 11 5578238 5580210 Vra7g0056 7 1256842 1259150 PCT