Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0683 ATGTCTGACTCACATCTAACTTTCTACTCTCCTTCGTCCATTCTTGCTCTTGTTCCAGTCTTCTTCATCTTCTTCATTCTTATCAAAAGAAAGCAAACCAAACCCAGGCTCAATCTTCCCCCAGGTAACATGGGATGGCCATTTCTTGGTGAAACCATTGGCTATTTGAAGCCTTATTCTGCTACCACAATAGGGGAATTCATGGAGCAGCACATAGCAAGGTATGGTACAATTTACAAGTCCAAGCTATTTGGGGAGCCCGCGATAGTGTCAGCAGACGCAGGACTGAACAGGTTCATTCTACAGAACGAGGGGAAACTGTTCGAGTGCAGCTACCCCAGAAGCATTGGTGGAATACTCGGGAAATGGTCCATGCTGGTCTTGGTTGGCGACATGCACAGAGACATGCGGGTTATATCACTCAACTTCCTAAGCCACGCCAGGCTCAGAACCCACCTCTTGAAAGAGGTGGAGAAACACACCCTCTTGGTTCTAAACTCTTGGAACCAAAATTGCACATTCTCAGCCCAAGATGAAGCCAAGAAGTTCACCTTCAATCTGATGGCTAAGCATATCATGAGCATGGATCCTGGGGAAATCGAGACAGAGCAACTGAAGAAAGAGTATGTCACTTTCATGAAAGGGGTGGTATCCGCGCCACTGAATCTACCTGGAACTGCATACCGAAAGGCGTTAAAGTCTAGGTCCACCATACTGAAGTTCATAGAGGGGAAAATGGAAGAGAGAGTGAAGAGAATCGAAGAAGGAAACGAGAGTTTGGAGGAAGACGATCTTCTGAACTGGGTTTTGAAGCACTCGAATCTCTCGACGGAACAAATTCTGGACTTGATTCTGAGCTTGCTCTTCGCTGGCCATGAAACTTCGTCGGTAGCCATAGCTCTAGCCATTTACTTTTTGCCCGGTTGTCCTCAAGCTATGCAACAGTTAAGGGAAGAGCACAGTGAAATTGCCAGAGCGAAGAAAGAAGCAGGGGAAGTGGAACTGACATGGGAGGATTACAAAAGAATGGAATTTACTCATTGTGTTGTGAACGAGACACTGAGGTTGGGAAATGTTGTGAGGTTTCTCCACAGGAAGGCTCTGAAAGACGTTAATTATAAAGGTTATGACATTCCATGTGGGTGGAAAGTCCTTCCGGTGATTGCAGCCGTGCATCTGGATCCTTCACTTTTTGACCAACCTCAACAATTCAATCCATGGAGATGGCAGAACAATGGCGGTCGTGGGAGTTGTCCGAGCAAGAGCGCAGCAAACAATAACTTTCTTCCGTTCGGAGGAGGTTCACGGCTGTGCGCGGGATCTGAGTTAGCCAAGCTTGAAATGGCGGTTTTCATCCATTATCTCATCCTCAACTACCACTGGGAATTGGCCGAAACAGATCAAGCTTTTGCCTACCCTTTCGTGGACTTCCCAAAGGGCCTACCCATCAGAGTCCAAGCCCACTCTCTCATTTGA 1476 0.4702 MSDSHLTFYSPSSILALVPVFFIFFILIKRKQTKPRLNLPPGNMGWPFLGETIGYLKPYSATTIGEFMEQHIARYGTIYKSKLFGEPAIVSADAGLNRFILQNEGKLFECSYPRSIGGILGKWSMLVLVGDMHRDMRVISLNFLSHARLRTHLLKEVEKHTLLVLNSWNQNCTFSAQDEAKKFTFNLMAKHIMSMDPGEIETEQLKKEYVTFMKGVVSAPLNLPGTAYRKALKSRSTILKFIEGKMEERVKRIEEGNESLEEDDLLNWVLKHSNLSTEQILDLILSLLFAGHETSSVAIALAIYFLPGCPQAMQQLREEHSEIARAKKEAGEVELTWEDYKRMEFTHCVVNETLRLGNVVRFLHRKALKDVNYKGYDIPCGWKVLPVIAAVHLDPSLFDQPQQFNPWRWQNNGGRGSCPSKSAANNNFLPFGGGSRLCAGSELAKLEMAVFIHYLILNYHWELAETDQAFAYPFVDFPKGLPIRVQAHSLI* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0683 491 PRINTS P450 superfamily signature 290 307 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra11g0683 491 PRINTS P450 superfamily signature 348 359 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra11g0683 491 PRINTS P450 superfamily signature 429 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra11g0683 491 PRINTS P450 superfamily signature 438 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra11g0683 491 PANTHER CYTOCHROME P450 26 68 487 - -
Vra11g0683 491 PANTHER BNAC01G23810D PROTEIN 68 487 - -
Vra11g0683 491 Coils Coil 309 329 - -
Vra11g0683 491 Pfam Cytochrome P450 40 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra11g0683 491 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 431 440 IPR017972 GO:0005506|GO:0016705
Vra11g0683 491 Coils Coil 243 263 - -
Vra11g0683 491 Gene3D Cytochrome P450 28 487 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra11g0683 491 PRINTS E-class P450 group I signature 72 91 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra11g0683 491 PRINTS E-class P450 group I signature 279 296 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra11g0683 491 PRINTS E-class P450 group I signature 299 325 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra11g0683 491 PRINTS E-class P450 group I signature 347 365 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra11g0683 491 PRINTS E-class P450 group I signature 387 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra11g0683 491 PRINTS E-class P450 group I signature 428 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra11g0683 491 PRINTS E-class P450 group I signature 438 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra11g0683 491 SUPERFAMILY Cytochrome P450 36 485 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0683 Vra-Chr11 5500324 5504198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0683 29 410 Cytochrome P450 AT3G50660 77.171 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0683 K09587 - gmx:100789515 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0683 11 5500324 5504198 Vra11g0683 11 5500324 5504198 ECH
Vra11g0683 11 5500324 5504198 Vra7g0049 7 1170292 1174004 PCT