Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0682 ATGGAGACGAAGGACAAAATGAATAATGAAGAACTTGCTGTGGAGTCTCCAACTTCGGTTCTCGAAGATGAGGATGTTTGTGCCCCCAAAGATGAAGTTCAGTTGGAGGAAGAGTTAATTGCTGATGTCATAGACGATGGGTCGTCTCTTGTATCCAAAACGATGGCGGAGGAGGAAGCGAAGTTACTTAATGCTAGGATAAAGGAAGAGGAGGTGCAGTGCGAGGAGGCACCTGACCTCAACGACACACAGTTTAACAAATTGGATGAGCTTTTGACTCAGACCAAGCTGTACTCCGAATTTTTGCTGGAGAAAATGGATGACATCACACTTAATGTGGGTGAACAAGTGAAAATGGAAGAGCAAGAGAGCAATCCTTCTGCAAAGAGGGGTAGGGGATCGAAAAGAAAAGCTGCTTCCCAGTGCAATACTAGGAGGGCCAAAAGGGCAGTTGCTGCCATGCTAACAAGATCTAAAGAAGGTGAGGAGACTGTAGATGTGAAAATGACTGAGGAAGAAAGAGTTGAGAAGGAGCAGAAAGAGCTCATGCCTTTACTGACAGGGGGGAAATTGAAGCCTTATCAACTAAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGAATTCTTGCTGATCAAATGGGTCTTGGAAAGACAATCCAAACTATTGGATTTCTCTCACATCTAAAAGCGAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCAACCCTTTCAAACTGGGTGAACGAGATTTCTAGGTTTGCACCATCACTTCCTACAATTATCTACCATGGTGACAAGAAGGAGAGAGATGAGATCCGAAGGAAATACATGCCTAGAACAATTGGCCCAAAATTTCCCATAGTCTTAACTTCTTACGAGGTTGCATTAAATGATGCCAAGAAATATTTGAGGCCATACAGTTGGAAATATCTCGTTATTGATGAGGGACACAGGCTCAAAAATTCACAATGCAAATTAGTAAAGGCATTGAAATACTTAACTGTTGAAAACAAGCTTCTTCTAACTGGAACTCCACTTCAGAACAACCTGGCCGAACTATGGTCTTTATTGAACTTCATTTTGCCTGATATTTTTGCATCCCTTGAAGAGTTCGAGTCATGGTTTAATTTGTCAGCGAAGGGCAATAATGAAACAACAAAGGAAGAATTAGAAGAGAAAAGAAGATCTCAAGTAGTAGCAAAGCTCCATGCTATTCTTCGACCCTTTCTTCTTCGTAGGATGAAGTCTGATGTGGAGATTATGTTGCCAAAGAAAAAAGAGATTATTATCTATGCAAACATGACCGAATATCAGAAGAATTTGCGGGATCATTTAGTTAATAAGACGTTGGGAAACTATTTAAAAGAAAAAATGTCAAGCGGACGCCCTTTTCCTGCAAGTGCGCTTCGTAATTTGGCCATTCAGCTTAGGAAAGTGTGTAACCATCCCGATCTTATAGATCCTGATTGTGATCATACAAATTTATATCCTCCTGTAAATGAAATAGTTGAACAGTGTGGAAAATTCCATTTGCTTGATCGATTGGTGCAACGTTTATTTGCAAGGAATCACAAAGTTCTTGTCTTCAGTCAGTGGACTAAAGTGTTAGATATAATAGATTATTATTTTAGTGAAAAAGGCTTCGAAGTTTGCAGGATTGATGGTTCTGTGAAACTGGATGACAGGAAACGACAGATCCAGGACTTCAACGATGAAAATAGCAACTGCAGAGTTTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATCAACCTTACTGCAGCTGATACTTGCATTCTTTATGATAGTGACTGGAATCCTCAGGTGGATTTGCAGGCCATGGATAGGTGTCATAGAATTGGTCAAACAAAGCCTGTTCATATCTACCGGCTGTCAACTGCTCAATCCATAGAGGATCGCATGTTGAAAAGAGCTTTTAGCAAATTGAAGCTTGAGCATGTGGTGATTGGGAAAGGACAGTTTCATCAAGAGCGTAAAGCTGTCAATACTGATCAGATAGAGGAAGAGGATGTTTTGGCATTGCTTCGTGACGATGAAACAGATGAAGATAAAATGATACGAACAGATATTAGTGATGAAGACCTGGAGAAGCTCATGGATCGCAGTGATCTTATCGTCAACAACTCAGACGACTCTCCATGCAGTTCCTTTCCTCTTAAAGGTCCAGGGTGGGAGGTGGTGATTCCAACTGCGACTGGAGGTGTACTCTCTACTCTCAACAGCTAG 2271 0.4126 METKDKMNNEELAVESPTSVLEDEDVCAPKDEVQLEEELIADVIDDGSSLVSKTMAEEEAKLLNARIKEEEVQCEEAPDLNDTQFNKLDELLTQTKLYSEFLLEKMDDITLNVGEQVKMEEQESNPSAKRGRGSKRKAASQCNTRRAKRAVAAMLTRSKEGEETVDVKMTEEERVEKEQKELMPLLTGGKLKPYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPTIIYHGDKKERDEIRRKYMPRTIGPKFPIVLTSYEVALNDAKKYLRPYSWKYLVIDEGHRLKNSQCKLVKALKYLTVENKLLLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSAKGNNETTKEELEEKRRSQVVAKLHAILRPFLLRRMKSDVEIMLPKKKEIIIYANMTEYQKNLRDHLVNKTLGNYLKEKMSSGRPFPASALRNLAIQLRKVCNHPDLIDPDCDHTNLYPPVNEIVEQCGKFHLLDRLVQRLFARNHKVLVFSQWTKVLDIIDYYFSEKGFEVCRIDGSVKLDDRKRQIQDFNDENSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQVDLQAMDRCHRIGQTKPVHIYRLSTAQSIEDRMLKRAFSKLKLEHVVIGKGQFHQERKAVNTDQIEEEDVLALLRDDETDEDKMIRTDISDEDLEKLMDRSDLIVNNSDDSPCSSFPLKGPGWEVVIPTATGGVLSTLNS* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0682 756 SMART helicmild6 545 629 IPR001650 -
Vra11g0682 756 CDD SF2_C_SNF 505 639 - -
Vra11g0682 756 Pfam Helicase conserved C-terminal domain 522 629 IPR001650 -
Vra11g0682 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 519 687 IPR001650 -
Vra11g0682 756 Gene3D - 427 726 IPR027417 -
Vra11g0682 756 Pfam SNF2-related domain 194 494 IPR000330 GO:0005524|GO:0140658
Vra11g0682 756 MobiDBLite consensus disorder prediction 1 24 - -
Vra11g0682 756 SMART ultradead3 187 382 IPR014001 -
Vra11g0682 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 714 IPR027417 -
Vra11g0682 756 Gene3D - 158 420 IPR038718 -
Vra11g0682 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 421 IPR027417 -
Vra11g0682 756 Coils Coil 53 75 - -
Vra11g0682 756 MobiDBLite consensus disorder prediction 117 143 - -
Vra11g0682 756 PANTHER SNF2/RAD54 HELICASE FAMILY 10 755 - -
Vra11g0682 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 371 IPR014001 -
Vra11g0682 756 PANTHER BNAC07G16550D PROTEIN 10 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0682 Vra-Chr11 5475315 5481533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0682 158 678 RAD5 or RAD16-like Gene Family AT3G16600 25.039 1.02e-33 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra11g0682 SNF2_N 3e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0682 K19001 - gmx:100777687 1286.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0682 11 5475315 5481533 Vra11g0682 11 5475315 5481533 ECH