Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0680 ATGGGGGACTTCAACAGCAACAACAACGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCTCGCACCAAAGCCCAAAACCGTTCCAACGTCCTTCAGCTCAAACTGATTGGACAGAGTCATCCGACTGGTCTCACAGCGAACCTGCTGAAGCTCTTCGAGCCTAGGCCTCCCTTGGAATACAAACCGCCGCCGGAGAAACGGAAATGTCCACCGTTGACAGGGATGGCACAATTTGTGAGCAAATTTGCTGAGCCTGGGGATCCAGAATACGCTCCACCTGTTCCAGAAACCGAAACTCCTGCACAAAAAAGAGCCAGAATACACAAGCTAAGACTAGAAAAGGGAGCTGCAAAGGCTGCTGAAGAGCTTGAGAAATATGATCCTCATAATGATCCAAATGTGTCTGGAGATCCATACAAGACATTGTTTGTGGCTAAACTTAGTTACGAGACCACTGAAAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTAGTTGCTGACAAAGAGACTAATAAGCCCAAGGGTTATGCTTTCATTGAGTTCCTACATACAAGAGACATGAAAGCTGCTTACAAACAGGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTCGTTGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCTCGTCGTCTGGGTGGTGGGCTTGGTACTACTAGAGTTGGGGGTGAAGAAGTTAATCAACGGCATTCTGGGAGGGAGCAACAACAGTCTCGTTCTGAAGAACCAAGAGCACGAGAGGACCGGCATGGTGATAGGGACAGGGAAGTATCACGTGAAAAAGGTAGGGATAGAGATAGAGATCGGGAGCGATCGCGGGAGCATTCTCATGAAAGGGTCAGGGATCGTGATTATAGAGAGGATAGACATCACAGAGACAGAGACAGGACAAGAGACAGGGATAGGGAAAGAGACAGAGATCGTGGACGTGATCGAGATAGGGCACGGGATCGTGATAGGGATAGGGACCGTGATCGACACCGTGAAAGGGATAGAGATTATGATGTTGGGGACACTGATCGACGTTCACGTGATAGGGAGTCTGAATATGATCGTGTGGAATCTAAACATGAGAGGGACCAACATGGAGAAAGGAACCGTGACTATGAGCCTGAGGATGATCGTGGTAGGCATAGCCAGTATGAGCATGGACGTCGACATGCTGACCCTGATCATGACCCTGAGCAGTATGACCACTACCATGGAGATGACCGTGGTGATCATTATAATCAGTATCATGACCATGATAGGATGGAAGATGACTACCATGTAGGGCGTGCAACATCTGAATCACATGAAAAGGAGAAAAGTCATGGTACAGACCGTGAATATCGTCGCTCAGAGAGATCTCATTCCCGGGAGTATGATTACTAG 1431 0.4829 MGDFNSNNNDAFMRNQNAAVQARTKAQNRSNVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGDPEYAPPVPETETPAQKRARIHKLRLEKGAAKAAEELEKYDPHNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVADKETNKPKGYAFIEFLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSRSEEPRAREDRHGDRDREVSREKGRDRDRDRERSREHSHERVRDRDYREDRHHRDRDRTRDRDRERDRDRGRDRDRARDRDRDRDRDRHRERDRDYDVGDTDRRSRDRESEYDRVESKHERDQHGERNRDYEPEDDRGRHSQYEHGRRHADPDHDPEQYDHYHGDDRGDHYNQYHDHDRMEDDYHVGRATSESHEKEKSHGTDREYRRSERSHSREYDY* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0680 476 CDD RRM_snRNP70 141 231 IPR034143 GO:0030619
Vra11g0680 476 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 1 352 - -
Vra11g0680 476 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 45 133 IPR022023 -
Vra11g0680 476 Gene3D - 129 255 IPR012677 -
Vra11g0680 476 PANTHER - 1 352 - -
Vra11g0680 476 MobiDBLite consensus disorder prediction 245 476 - -
Vra11g0680 476 SMART rrm1_1 143 216 IPR000504 GO:0003723
Vra11g0680 476 SUPERFAMILY RNA-binding domain, RBD 130 242 IPR035979 GO:0003676
Vra11g0680 476 MobiDBLite consensus disorder prediction 86 106 - -
Vra11g0680 476 MobiDBLite consensus disorder prediction 224 476 - -
Vra11g0680 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 213 IPR000504 GO:0003723
Vra11g0680 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 220 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0680 Vra-Chr11 5457908 5462692 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0680 144 190 C2H2 Transcription Factor Family AT2G19380 42.553 2.43e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0680 K11093 - gmx:100814484 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0680 11 5457908 5462692 Vra11g0680 11 5457908 5462692 ECH