Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0679 ATGTCTTCCTCTCCCAACAACAGTTCTCCAGATAATGCAACACCTGATGATTCCACGCCAGACGACAGCACCCCTGACAACAGCACCCCTGATGACGCTGACAACTCATCTTCACCACCATCAAATTCATCACCGCCACCATCACCACCGCCACCATCATCACCGCCACCATCATCACCGCCACCATCATCACCGCCACCATCATCACCGCCACCATCATCGCCTCCACCTTCATCGCCTCCACCTTCATCGCCACCTCCATCTCCACCACAATCATCTTCATCTCCATCTCCGCCAACCCCATCAGAAAAGTCCTCTCCTTCCCCTCCAACATCAACCAACCAAAGCCCGCCATCACCCAATACTTCCCCACAGACACCTTCTCCACCCGCTTCATCACACTCTCCTCCCTCCTTTAAATCACCCACTCCTCCACACAAATCATTGCAACCTGCTTCAAAAAACAGTGGCAGTGACAGTGGCGGTAGTGGTAAACATGGAAACAGCGATAGCAGTGATCGTGACAGCCACGATAACAGTAAAGCCATAGTTGGAGCAGTGCTTGGGGTGGGGAGCGTGCTTCTTGTTTTGGTCATCGTCTGCGTTATCTGTTCCAGGAAGAAGAAAAAGAAGAGAATGTACTATTACGGAGAGCAATCATTCGGAAAAGGGAATAACAACTATTACAATAGTGGGCAACACCAGGGTTATTACGGAGGTCCACACGGGGACCATGTTGTGAGGGTGCAAAACGGAATGGTTCCCGGTGGCGGTGGTGGCGGTGGTGGGGGTGGTAGTGGGGCTGGTGGTGGGTGGGGTCCACCACCTCCTCCTATGATGCATAGCGCTGATATGAGCTCCAACTACTCGACGGGACCACCCCCTTTGCCTCCTCCCTCACCAAACCTTGCTCTAGGCCTCAAAGGTGGCACCTTTACATATGAGGAACTATCTGCTGCCACCAATGGATTCGCTGATTCAAAGCTGATAGGACAGGGTGGCTTCGGTTATGTCCACAAGGGTGTGTTGCCTAACGGAAAGGAAGTGGCAGTTAAGAGTCTAAAAGCAGGAAGTGGACAGGGAGAACGGGAGTTCCAAGCTGAGATTGACATCATCAGTCGTGTCCATCATCGCCATCTTGTGTCACTCGTTGGATACTCTATTTCTGGTGGCCAGAGAATGTTGGTCTACGAATTTATTCCCAATAAAACCTTGGAATATCACCTTCATGGAAAGGGAAGGCCTACAATGGATTGGCCTACCAGAATGCGAATTGCAATAGGATCAGCCAAAGGACTGGCTTATCTTCATGAAGATTGTCATCCTCGTATAATCCATCGTGATATTAAAGCTGCGAATGTCCTCATTGATGATAGCTTCGAAGCAAAGGTTGCTGATTTTGGATTGGCTAAGTTGACCACCGATAATAATACTCATGTATCAACTCGAGTCATGGGAACTTTCGGGTACCTAGCCCCAGAATATGCATCAAGTGGAAAATTGACTGAGAAGTCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACTGGTAGGCGACCTGTGGATCACACAAGTGCCATGGACGACAGCTTAGTAGATTGGGCTCGACCACTACTGACTCGTGGATTGGAAGAGGATGGCAACTTTGGAGAGTTGGTTGATCCATTCTTGGAGGGAAACTACAATCCTCAAGAATTGGCTAGGATGGCAGCTTGTGCTGCTGCTAGCATTCGACATTCTTCCAAGAAACGTCCAAAAATGAGCCAGATTGTAAGAATATTGGAAGGAGATGTGTCGCTGGATGATTTGAAAGATGGGATGAAGGCAGGGCATAGTACCGTTTTCAATTCTTCATCTGGGTCAGATCAGTATGATACAATGCAGTACAATGCAGACATGGAAAAGTTTAGAAAGGCAGTGTTCTCTAGCCAAGATTTTGGCATGAGCAGTGCTGGCTCTAGTAGTGAAGTGAGCCAGAAACAACGGCTTTAG 2001 0.4878 MSSSPNNSSPDNATPDDSTPDDSTPDNSTPDDADNSSSPPSNSSPPPSPPPPSSPPPSSPPPSSPPPSSPPPSSPPPSSPPPSSPPPSPPQSSSSPSPPTPSEKSSPSPPTSTNQSPPSPNTSPQTPSPPASSHSPPSFKSPTPPHKSLQPASKNSGSDSGGSGKHGNSDSSDRDSHDNSKAIVGAVLGVGSVLLVLVIVCVICSRKKKKKRMYYYGEQSFGKGNNNYYNSGQHQGYYGGPHGDHVVRVQNGMVPGGGGGGGGGGSGAGGGWGPPPPPMMHSADMSSNYSTGPPPLPPPSPNLALGLKGGTFTYEELSAATNGFADSKLIGQGGFGYVHKGVLPNGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYSISGGQRMLVYEFIPNKTLEYHLHGKGRPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDHTSAMDDSLVDWARPLLTRGLEEDGNFGELVDPFLEGNYNPQELARMAACAAASIRHSSKKRPKMSQIVRILEGDVSLDDLKDGMKAGHSTVFNSSSGSDQYDTMQYNADMEKFRKAVFSSQDFGMSSAGSSSEVSQKQRL* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0679 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Vra11g0679 666 PANTHER RECEPTOR-LIKE KINASE 70 661 - -
Vra11g0679 666 Gene3D Phosphorylase Kinase; domain 1 304 399 - -
Vra11g0679 666 Pfam Protein tyrosine and serine/threonine kinase 328 529 IPR001245 GO:0004672|GO:0006468
Vra11g0679 666 SMART serkin_6 324 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0679 666 MobiDBLite consensus disorder prediction 1 178 - -
Vra11g0679 666 ProSiteProfiles Protein kinase domain profile. 324 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0679 666 MobiDBLite consensus disorder prediction 40 144 - -
Vra11g0679 666 MobiDBLite consensus disorder prediction 255 299 - -
Vra11g0679 666 Gene3D Transferase(Phosphotransferase) domain 1 400 611 - -
Vra11g0679 666 MobiDBLite consensus disorder prediction 145 167 - -
Vra11g0679 666 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 70 661 - -
Vra11g0679 666 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Vra11g0679 666 SUPERFAMILY Protein kinase-like (PK-like) 303 597 IPR011009 -
Vra11g0679 666 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0679 Vra-Chr11 5445467 5454062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0679 181 663 Trihelix Transcription Factor Family AT1G70460 49.393 6.48e-152 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vra11g0679 PK_Tyr_Ser-Thr 5.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0679 - - gmx:100777163 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0679 11 5445467 5454062 Vra11g0679 11 5445467 5454062 ECH
Vra11g0679 11 5445467 5454062 Vra7g0047 7 1124115 1127382 PCT