Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0677 ATGCAACGTTTGTGCTATGACAACTCATTTCTGAAGAGTTATTCTTTCTTCACTTTGCTTCATCTTCTTCACCAATCCATTTTTCTCCTTTCATCAATCTTTCTGTGCGCATCCATGGTGAACAGAAATTCTAGCTGTGCCTCCAAATATCATAAACAACATGGAAAGTCAGCGGGAGAGGTTAGTAGAAGATCTTTGAAGGCCAAGATTAAAGTGTTGACAGATAAATACCGTGCCGAGAGAGGGGTATCAGTTAAAGAAAAGGTTCATAGACATTGGAGGAATCTTGAGCCTGTTTTTCCAACGAATAAGAGAGTATTATCAGGGAATAAGTATTTGCAGGTAGGGGAAAACGTCAATAAGCTGTGTTTGAGAATTGACAATCCTTTATGTAAATTCAACGGGTTCCCTGAAGCTACACCAGAGGAGGATCGATTCAATGATGTGGACATATCAGCAGCAGAAAGTATTAGGATTCCAAACGAGGAAAAACTACCAACATATACGGCTTGGGTATATGTGGCCAGAAATGAGAAAATGGCTGAAGATCAATCGGTTATTGGAAAGTTCCAGATGTACTATGACAATAACAGAGGTGAAATGATGATATGCAGTGATAATGAGGAAGAGATACCAAATACCCAGAATGATAAACATGAATTCACTGAGGCTGAGGACCAAATTCTGAGGATGACACTCGAGGAATATGGGTCTACTAAGGAGGTATTGGGTATCATTGAAGAGATTTTTGAGACTGACGATTCAGAAATTCAGGAGAGGTATGAAATACTAAAGGAAAAGAGTATGGAGAGTCTGGATCAACATTCTAAAGATTGTCATTGTAAAGGATGTCAGAGTCATCATGAAGTATGCTTACAGAAAAGTTTGGGTGGGACTTTAGAAACTTTTGATAAAACCTTCTGTCGTCGATGTTTGATCTTTGACTGTGCTATCCATGGCACTGATCAACCTTTAATATGTCTTAGCGAAAAACATGTCTGCTCTGAACCTGAAGTTGGTAGGAAACCATGCAGTGATCAATGTTACCTTCTGGATAAAGGAATTACACCAATGGAAGTGGATGATAAAGGAATTACACCAATGGAAGTGGACACAACTTTGCCTCCTAATGAGCCTCGGAGTTCTTGTGAGCTGAAGAGAACCTCAGATGATATAATTATCAATATTGGCAATCATTACAGTGAACTAAGTTTGGATGCTAGTGACAATGAAAATCACACAACATCTAGTGCATCTTTGGAAAGTCTTGGTGAACATGCTTCAAAGAAATTACCAGTTTCTGGTAGCTTTGACCATGGTGAGCGGGACAAAGGAGTTATGAATGGACGAGAAGATCTTACAAAGGAGACAGAATTTAATGAGATGCCCATTTCAAAGGACGTGCAAACTGATAAGATGATAAGTGACTCGGATTGGAGACCTACAGAGAGAGATTTATATTTGAAGGGAGTAGAAATGTTTGGAAAAAATAGTTGCCTCATAGCCGCTACTTTTCTTACTGGCTTGAAGACTTGCTTGCAAGTAGCGAGGTATATGTTTGCTGGTGGAGAGTCAATGATCCATGGATCCACAACAAATTCAATCGTGGATGGAAATGAAAATATCAATGCAGAGTGCACAGACCTAGAAATGTCATCAAGATCAAGATCACAACGGAAAAAGGGAAAACCTAGGAAGTTCAACTATACTCGAAAGTCTGCCGGTCTGCCCCCAAGATGGAGAAAAATTGCTTATGGGCAAAACCTGTGCAATAAGCAATATACTCCTTGTGGATGTCATGGAATGTGTGGAAAGGAATGCTCTTGTCTTCTTAATGGAACTTGCTGTGAAAAATATTGTGGGTGTTCAAAGATGTGCACAAATCGATTCAGAGGATGTCATTGTACTAAGAGTCAATGCAGAAGTCGATTATGTCCGTGCTTTGCAGCCAATCGTGAATGTGACCCAGATGTCTGTCGAAATTGTTGGGTTAGTTGCGGCGATGGTTCATTAGGGGAGCCACCTCGACGTGGAGATAGCAAATGCGGAAATATGAATATTCTTTTAGGACATAAAGAGAGGATTCTTTTGGCAAAATCAGACGTTGTAGGATGGGGAGCCTTCGCAAAGAATCCGATTAACAAAAGTGTTTGTCTAGGAGAGTACAAGGGTGAATTAATCTCTCCTAAAGAAGCAGAAAAACGTGGAAAACTATATGATCGTGTCAACACTTCCTTCCTTTTTAACCTCAATAATGAGTGGGTTATTGATGCACATCGTCTAGGAGACAAATTAAAATTTGCGAACCATTCATCAAAACCCAACTGCTATGCAAAGGTGATGTTTGTTGGAGGTGAACATCGAGTGGGAATATATGCCAAGGAAAACATTGAAGCTGGTGATGAGATTTTTTACGACTATTGGTATGATCTAGAATGTGCACCATCTTGGGCTCTTCCACCAGAAGACAATGCTTCCAAAAAAGATGAATTAGGCAATTCTCAGAGCAAGGGAAAGAAACGTTAG 2526 0.399 MQRLCYDNSFLKSYSFFTLLHLLHQSIFLLSSIFLCASMVNRNSSCASKYHKQHGKSAGEVSRRSLKAKIKVLTDKYRAERGVSVKEKVHRHWRNLEPVFPTNKRVLSGNKYLQVGENVNKLCLRIDNPLCKFNGFPEATPEEDRFNDVDISAAESIRIPNEEKLPTYTAWVYVARNEKMAEDQSVIGKFQMYYDNNRGEMMICSDNEEEIPNTQNDKHEFTEAEDQILRMTLEEYGSTKEVLGIIEEIFETDDSEIQERYEILKEKSMESLDQHSKDCHCKGCQSHHEVCLQKSLGGTLETFDKTFCRRCLIFDCAIHGTDQPLICLSEKHVCSEPEVGRKPCSDQCYLLDKGITPMEVDDKGITPMEVDTTLPPNEPRSSCELKRTSDDIIINIGNHYSELSLDASDNENHTTSSASLESLGEHASKKLPVSGSFDHGERDKGVMNGREDLTKETEFNEMPISKDVQTDKMISDSDWRPTERDLYLKGVEMFGKNSCLIAATFLTGLKTCLQVARYMFAGGESMIHGSTTNSIVDGNENINAECTDLEMSSRSRSQRKKGKPRKFNYTRKSAGLPPRWRKIAYGQNLCNKQYTPCGCHGMCGKECSCLLNGTCCEKYCGCSKMCTNRFRGCHCTKSQCRSRLCPCFAANRECDPDVCRNCWVSCGDGSLGEPPRRGDSKCGNMNILLGHKERILLAKSDVVGWGAFAKNPINKSVCLGEYKGELISPKEAEKRGKLYDRVNTSFLFNLNNEWVIDAHRLGDKLKFANHSSKPNCYAKVMFVGGEHRVGIYAKENIEAGDEIFYDYWYDLECAPSWALPPEDNASKKDELGNSQSKGKKR* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0677 841 Pfam CXC domain 632 663 IPR041355 -
Vra11g0677 841 MobiDBLite consensus disorder prediction 823 841 - -
Vra11g0677 841 ProSiteProfiles SET domain profile. 693 808 IPR001214 GO:0005515
Vra11g0677 841 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 61 840 IPR045318 GO:0006338|GO:0018024
Vra11g0677 841 ProSiteProfiles CXC domain profile. 580 679 IPR026489 -
Vra11g0677 841 SUPERFAMILY SET domain 563 811 IPR046341 -
Vra11g0677 841 MobiDBLite consensus disorder prediction 550 570 - -
Vra11g0677 841 Pfam SET domain 704 807 IPR001214 GO:0005515
Vra11g0677 841 MobiDBLite consensus disorder prediction 360 382 - -
Vra11g0677 841 Gene3D SET domain 594 809 IPR046341 -
Vra11g0677 841 MobiDBLite consensus disorder prediction 407 447 - -
Vra11g0677 841 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 841 IPR025778 GO:0031519
Vra11g0677 841 MobiDBLite consensus disorder prediction 407 423 - -
Vra11g0677 841 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 61 840 - -
Vra11g0677 841 MobiDBLite consensus disorder prediction 819 841 - -
Vra11g0677 841 CDD SET_EZH 693 809 - -
Vra11g0677 841 SMART set_7 693 814 IPR001214 GO:0005515
Vra11g0677 841 SMART CXC_2 628 665 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0677 Vra-Chr11 5418102 5433175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0677 682 807 C2H2 Transcription Factor Family AT2G23740 28.671 5.56e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra11g0677 SET 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0677 - K11430 vra:106776653 1741.47