Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0667 ATGCCGGTTGACTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCGTGTCTTCCTCTGGCAATCAGACAGTGCCCCCAAAACCGACGACAAAGAAGAAGCGAAACCTTCCAGGAATGCCAGATCCGGATGCTGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCGACGAACCGGTTCGTGTGTGAAATATGCAACAAGGGGTTTCAGAGGGACCAGAACCTTCAGCTTCATCGGAGGGGTCACAATCTGCCTTGGAAGCTGAGGCAGAGGTCAAGCAAGGAGGTGAGGAAGAGGGTGTACGTGTGTCCCGAACCGACGTGCGTTCACCACGATCCTTCTAGAGCTTTGGGTGATCTCACGGGGATTAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGTACCCTCTTCTCAAGGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTGGCAGAGGAAAGTGCGAGATCTCAGCCTCAGACTGTTGCAAAGGCTAGTTCCGAGTCAGATTCGAAGGCTGTAACCGGTGATTCGTCGCCTCCCGCGGCTGCGGCTGCGGCTACGCCTCCACCGCCTTCTGCACCGCCAGCTAGTTCTAAGTCAAACAGTGTTGTTGTATCGTCGTCTGTTTTGCAGACACCAAATCCAGAGTTGCCAGAAAATTCCCCACAAGTCATAGAAGAACCGCAGGCCAATCCTGCTGTGAGTGGAAGCTGTAGCGGCACCAGTACCAGTACCAGCACCACTAGCTCAACAAGCAACAGCAATGGTGGTGCTAGCAGCAGTGTATTTGCAAGCCTGTTTGCTTCATCAACAGCATCCGCAACTGCGAGCCTCCAATCTCAAACTCCAGCATTCACTGACCTAATCAGGGCCATGGGGCATCCTGATCATCCAGCAGACCTCTCACGGCCTTCAGCTTCGGAGCCCATTTCTCTGTGCCTTGCTACCAATCACGGGTCATCCATTTTTGGAACAGGATTGCAGGAGTGCCGTCAATATGCCCCACCGCCACAGCCAGCCATGTCTGCTACTGCTTTGCTGCAAAAAGCCGCCCAAATGGGTGCAGCTGCTACAAATGCCTCTTTTCTTCGTGGATTAGGCATAGTGTCTTCTGCGTCAACCTCATCAGGTCAGCAAGATAGTTTACAATGGGGTCAGCAACCAGGGGAACCGGAGGGTGCCTCAGTTCCAGCAGGTCTTGGACTCGGGCTTCCCTGTGACGGCAGCTCTGGACTAAAGGAGTTAATGATGGGGACTCCCTCTGTGTTTGGTCCAAAGCAGACCACCCTTGATTTTCTCGGGCTGGGAATGGCCGCTGGGGGCAACCCCGGTGGAGGCTTATCGGCACTCATCACCTCAATTGGTGGCAGTCTGGATGTTACTGCTGCAGCAGCAGCAGCATCCTTTGGTAATGGAGAATTCCCTGGCAAGGATATTGGGAGGAGTACTTGA 1569 0.5322 MPVDLDNVSTASGEASVSSSGNQTVPPKPTTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQPQTVAKASSESDSKAVTGDSSPPAAAAAATPPPPSAPPASSKSNSVVVSSSVLQTPNPELPENSPQVIEEPQANPAVSGSCSGTSTSTSTTSSTSNSNGGASSSVFASLFASSTASATASLQSQTPAFTDLIRAMGHPDHPADLSRPSASEPISLCLATNHGSSIFGTGLQECRQYAPPPQPAMSATALLQKAAQMGAAATNASFLRGLGIVSSASTSSGQQDSLQWGQQPGEPEGASVPAGLGLGLPCDGSSGLKELMMGTPSVFGPKQTTLDFLGLGMAAGGNPGGGLSALITSIGGSLDVTAAAAAASFGNGEFPGKDIGRST* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0667 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Vra11g0667 522 MobiDBLite consensus disorder prediction 413 438 - -
Vra11g0667 522 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 521 - -
Vra11g0667 522 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Vra11g0667 522 MobiDBLite consensus disorder prediction 1 43 - -
Vra11g0667 522 MobiDBLite consensus disorder prediction 195 214 - -
Vra11g0667 522 MobiDBLite consensus disorder prediction 236 297 - -
Vra11g0667 522 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 7 521 - -
Vra11g0667 522 MobiDBLite consensus disorder prediction 195 297 - -
Vra11g0667 522 Gene3D Classic Zinc Finger 115 195 - -
Vra11g0667 522 MobiDBLite consensus disorder prediction 413 427 - -
Vra11g0667 522 SMART c2h2final6 137 157 IPR013087 -
Vra11g0667 522 SMART c2h2final6 102 132 IPR013087 -
Vra11g0667 522 SMART c2h2final6 61 83 IPR013087 -
Vra11g0667 522 MobiDBLite consensus disorder prediction 9 30 - -
Vra11g0667 522 Gene3D Classic Zinc Finger 41 107 - -
Vra11g0667 522 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0667 Vra-Chr11 5336764 5340378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0667 1 522 IDZ Gene Family AT5G66730 60.221 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra11g0667 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0667 K25869 - gmx:100806404 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0667 11 5336764 5340378 Vra11g0667 11 5336764 5340378 ECH
Vra11g0667 11 5336764 5340378 Vra7g0043 7 1074731 1078356 PCT