Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0661 ATGAGAGTTCCCGTTCCCTCATCCCCACAGGCTAACCCAAAACCCACTAATAACCTACTCCGTACAATTGCACTTCCCAACCTCAACACCACGAGCCTCTGCTACGAGCCCACCTCTGTCCTCGACCTGTGCCGAAGCCCCAGCCCGGGCTCCGAAAAGCCCACCGATCACTCAGTTGTCGTCACGGACTCCCAAGATTATCTCGACCTGGACGACCATGCGTTGCACAACTTGGACTGGGACTCCATCATGAAGGACTTGGGCTTACACGACGACTCTGGTGCTCCCCTCTTGAAGACTATTCTTCACCCCGACAACAACAATAACAACCCATGCGACGACTTCACAATCGCACCCTTCGACCACGCCATTGAATTCTCTACTCTCTCCGACATCTACTCCAACCAAAACCTCACCTTCGATTTTAACCACCTCGTCCACGATTTCAGCAACCAACATCACAACAGCGGCTTCGATTTCATCGAAGAGCTCATCCGCGCCGCGGATTGCTTCGACACCAAGCAGTTACACGTTGCACAGGTGATATTGGAGCGGCTCAATCAACGGCTACGATCCCCCGTGGGAAAACCTCTCCAACGCGCAGCGTTTTACTTCAAAGAAGCTCTCCAGTCTCTTCTCTCCGGTTCGAACCGGACGCCCAGGATTTCCTCGCTGGTGGAAATCGTGCATGGCATCAGAACCTTCAAGGCCTTCTCTGGAATCTCGCCGATCCCAATGTTCTCGATCTTCACCACCAACCAGGTGGTTCTCGATCACGCTGCGTGCTCCTTCATGCACGTTATCGACTTCGACATCGGCCTTGGGATCCAATACGCTTCTCTCATGAAGGAGATAGCGGAGAAGGCCACGGAATCGCCGCTTCTCCGAATCACCGCCGTCGTTCCCGAAGAGTACGCCGTCGAGAGCACGCTGGTACGCGAAAACCTGGCGCAGTTTGCTCTCGAACTCAGGATTCGCGTCCAGGTCGACTTCGTTCCGCTCCGAACCTTCGAGACGCTCTCCTTTAAGGCAGTGAAGCTCGTCGACGGCGAGAGCACCACCGTGCTCCTTTCCCCAGTGATTTTCCGCCACCTCGGAAATGCTGCCGCTTTCTTGGCGGACTTGCGGATGGTCTCTCCCAGCGTGGTGGTTTTGGTGGATAGCGAGGGGTGGGCTGATATGGCCACAGCAGCAGCCTCGTCGTTCCGACGCGGCGTCGTGAGCAGTTTGGAGTACTACTCGATGATGTTGGAGTCGCTGGATGTGTCGACGGCTGGGGGAGGAGGGGAGTGGGTGAGGAGAATCGAGATGATGCATCTGCGACCGAAGATTTTGGCGGCGGTGGAGAGTTCATGGGGGCGGATGCCACCGTGGAGGGAGAGCTTCTACGGCGCCGGAATGCGGCCCGTTCAATTGAGCCAGTTTGTGGATTTCCAAGCAGAGTGCTTGTTGGCCAAGTCGCAAATCAGAGGCTTCCACGTGGAGAAACGTCAGAACGAACTTATACTGTTCTGGCATGACAGGGCCATGGTTTCCTCGTCAGCTTGGCGGTTTTAG 1557 0.5575 MRVPVPSSPQANPKPTNNLLRTIALPNLNTTSLCYEPTSVLDLCRSPSPGSEKPTDHSVVVTDSQDYLDLDDHALHNLDWDSIMKDLGLHDDSGAPLLKTILHPDNNNNNPCDDFTIAPFDHAIEFSTLSDIYSNQNLTFDFNHLVHDFSNQHHNSGFDFIEELIRAADCFDTKQLHVAQVILERLNQRLRSPVGKPLQRAAFYFKEALQSLLSGSNRTPRISSLVEIVHGIRTFKAFSGISPIPMFSIFTTNQVVLDHAACSFMHVIDFDIGLGIQYASLMKEIAEKATESPLLRITAVVPEEYAVESTLVRENLAQFALELRIRVQVDFVPLRTFETLSFKAVKLVDGESTTVLLSPVIFRHLGNAAAFLADLRMVSPSVVVLVDSEGWADMATAAASSFRRGVVSSLEYYSMMLESLDVSTAGGGGEWVRRIEMMHLRPKILAAVESSWGRMPPWRESFYGAGMRPVQLSQFVDFQAECLLAKSQIRGFHVEKRQNELILFWHDRAMVSSSAWRF* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0661 518 Pfam GRAS domain family 161 517 IPR005202 -
Vra11g0661 518 PANTHER SCARECROW-LIKE PROTEIN 15 6 517 - -
Vra11g0661 518 ProSiteProfiles GRAS family profile. 151 517 IPR005202 -
Vra11g0661 518 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 517 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0661 Vra-Chr11 5298499 5300646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0661 67 518 GRAS Transcription Factor Family AT4G36710 54.316 1.70e-166 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra11g0661 GRAS 1.4e-78 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0661 - - gmx:100807470 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0661 11 5298499 5300646 Vra11g0661 11 5298499 5300646 ECH
Vra11g0661 11 5298499 5300646 Vra7g0041 7 1045158 1047442 PCT