Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0659 ATGAATCATCGACCTTTCCAAGACAACATGATGTTCATCCCTCAGTTATACCCCGCCGATGCACCATACACTCAAATAATTGCTCAACAAGGTGAGAGTAAGAAGCCAAAACGCCGTCGTAGTAAGAAGAACAAAGGAGGAGAGAACGGTGCCTCCGAAGCCAACAGGAAGAGGAAGCTTAGTGCCGAGCAAGTTAATCTACTTGAGCAGAACTTTGGAAATGAGCATAAACTTGAGTCTGAGAGGAAAGACAGGCTCGCATTGGAGCTCGGTCTGGACCCTCGACAAGTTGCAGTGTGGTTTCAAAACAGAAGAGCTCGCTGGAAGAACAAAAAACTAGAAGAAGAGTACTCAAACCTTAAAAAATCCCACGAAGCCAACTTGCTCGAGAAATGTCGATTGGAAACCGAGGTATTGAAGCTGAAAGATCAACTTTCTGAGGCGGAGAAGGAGATTCAGAGGCTGTTGGAGAGTGGTGATAGAGTTCCCAGTAACAGCTCTAGTTCTTCACAATCGCAATCCATGGAAGCGGTGGACCCACCATTCTTCGGGGTGTTCGGAGTTGATGGGTATGATGATGATGTGTTTTACGGGCCCGAGACTCACTGCATGAACGCCTTGGAATGGATTAATCTGTATATGTAA 645 0.462 MNHRPFQDNMMFIPQLYPADAPYTQIIAQQGESKKPKRRRSKKNKGGENGASEANRKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKSHEANLLEKCRLETEVLKLKDQLSEAEKEIQRLLESGDRVPSNSSSSSQSQSMEAVDPPFFGVFGVDGYDDDVFYGPETHCMNALEWINLYM* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0659 214 Coils Coil 138 158 - -
Vra11g0659 214 MobiDBLite consensus disorder prediction 28 61 - -
Vra11g0659 214 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Vra11g0659 214 MobiDBLite consensus disorder prediction 155 176 - -
Vra11g0659 214 CDD homeodomain 56 112 IPR001356 GO:0003677
Vra11g0659 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 7 213 - -
Vra11g0659 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 213 IPR045224 GO:0003700
Vra11g0659 214 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Vra11g0659 214 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Vra11g0659 214 Coils Coil 103 130 - -
Vra11g0659 214 Coils Coil 51 71 - -
Vra11g0659 214 SUPERFAMILY Homeodomain-like 56 120 IPR009057 -
Vra11g0659 214 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Vra11g0659 214 MobiDBLite consensus disorder prediction 159 176 - -
Vra11g0659 214 MobiDBLite consensus disorder prediction 45 61 - -
Vra11g0659 214 SMART HOX_1 54 115 IPR001356 GO:0003677
Vra11g0659 214 Gene3D - 47 120 - -
Vra11g0659 214 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0659 Vra-Chr11 5284314 5286302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0659 1 214 Homeobox Transcription Factor Family AT4G36740 58.296 1.09e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vra11g0659 Homeodomain 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0659 K09338 - gmx:100809616 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0659 11 5284314 5286302 Vra11g0659 11 5284314 5286302 ECH
Vra11g0659 11 5284314 5286302 Vra7g0037 7 979407 981027 PCT