LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra11g0654	ATGACCGGAGGCGGATCGACGGGGAGGATGCCCACGTGGAAGGAGAGGGAGAACAACAAGAGGAGAGAAAGAAGACGGAGAGCGATTGCGGCCAAGATCTACGCCGGCCTTCGAGCTCAGGGTAACTACAAGCTTCCCAAACACTGCGACAACAACGAGGTCCTCAAGGCTCTTTGCGCAGAAGCTGGTTGGATCGTGGAAGAAGATGGAACTACCTACAGAAAGGTAAAACTCGATAATCACTCGTCTCATCACATCACAGGCTCAGATCTGCGATCACTCTTTCTCCACGATAATGCTGACTTCGATTCCCTCTCCAACGCCTCCTTCCGCCACCCTCTTTTCGCCACCTCCGCCCCCTCCAGTCCCTCGCGCCGCCACCACGTCGCGACTTCCACCATCCCTGAGTGCGACGAGTCTGACGCTTCCACCGTCGACTCTGCCTCCGGCCGTTGGGTTAGTTTTCAGGGTCAGACCGCCGCCGGTCCCCCTTCCCCTACCTTCAACCTCATGAAACCCGCTATGCTCCAGATCCCAGCTCAGGAGGGCGTACAGTGGGGTTCCGTTGCGGAGATAGGTAGAGGAGTGTCCGATTTTGACTTCGAGAATGGCAGAGTGAAGCCTTGGGAGGGTGAGAGAATACACGAGAATGAGTCACGTATCTTTAACATGTTTCGTTCTCGTGGGAAATCAACGAGGCTAGCTTGTAAGCTTTATGGTTCCTACCTTTGGCAATATCATGGAAGCAAATTGGATATGCAAGTGATGATCTGTCTCAACATCGACGGAGGAAAACAGAACGGACTTAGGTTCGCCGGAACGATGACCGGCGGTGGCTCGACGGGGCGGATGCCGACGTGGAAGGAGAGGGAGAACAACAAGAGGAGAGAAAGAAGACGGAGAGCGATTGCTGCCAAGATCTACGCCGGCCTTCGAGCTCAGGGTAACTATAAGCTTCCCAAACACTGCGACAACAACGAGGTCCTTAAGGCTCTTTGCGCAGAAGCTGGTTGGATCGTGGAAGAAGACGGCACTACCTACAGAAAGGTAAAACTCGATAATCACTCGATATCCAACAGCGCCCCTGTCACCCCTCCTCTTTCCTCTCCCCGAACCTCCAAGCGTAAGGCTGACTTCGATTCCCTCTCCAACGCCTCCCTCCGCCACCCTCTTTTCGCCACCTCCGCCCCCTCCAGTCCCTCGCGCCGCCACCACGTCGCTACTTCCACCATCCCTGAGTGCGACGAGTCCGACGCTTCCACCATCGACTCTGCCTCAGGCCGCTGGGTTAGTTTTCACGGTCAGACCCCCGCCGGTCCCCCTTCCCCTACCTTCAACCTCATGAAACCCGCTATGCACCAGATCCCTGCTCAGGAGGGCGTACAGTGGGGTTCCATTGCGGAGATAGGCAGAGGAGTCTCCGATTTTGAATTCGAGAATGGCAGAGTAAAGCCTTGGGAGGGTGAGAGAATACACGAGGTGGGAATGGATGATTTGGAGCTTACTCTGGGATTGGGAAAAGCTTGA	1527	0.5547	MTGGGSTGRMPTWKERENNKRRERRRRAIAAKIYAGLRAQGNYKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKVKLDNHSSHHITGSDLRSLFLHDNADFDSLSNASFRHPLFATSAPSSPSRRHHVATSTIPECDESDASTVDSASGRWVSFQGQTAAGPPSPTFNLMKPAMLQIPAQEGVQWGSVAEIGRGVSDFDFENGRVKPWEGERIHENESRIFNMFRSRGKSTRLACKLYGSYLWQYHGSKLDMQVMICLNIDGGKQNGLRFAGTMTGGGSTGRMPTWKERENNKRRERRRRAIAAKIYAGLRAQGNYKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKVKLDNHSISNSAPVTPPLSSPRTSKRKADFDSLSNASLRHPLFATSAPSSPSRRHHVATSTIPECDESDASTIDSASGRWVSFHGQTPAGPPSPTFNLMKPAMHQIPAQEGVQWGSIAEIGRGVSDFEFENGRVKPWEGERIHEVGMDDLELTLGLGKA*	509

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra11g0654	508	MobiDBLite	consensus disorder prediction	1	24	-	-
	Vra11g0654	508	Pfam	BES1/BZR1 plant transcription factor, N-terminal	7	133	IPR008540	-
	Vra11g0654	508	Pfam	BES1/BZR1 plant transcription factor, N-terminal	281	413	IPR008540	-
	Vra11g0654	508	PANTHER	BES1/BZR1 HOMOLOG PROTEIN 1	275	349	-	-
	Vra11g0654	508	PANTHER	BES1/BZR1 HOMOLOG PROTEIN 1	1	77	-	-
	Vra11g0654	508	PANTHER	BES1/BZR1 HOMOLOG PROTEIN 1	98	218	-	-
	Vra11g0654	508	PANTHER	BES1/BZR1 HOMOLOG PROTEIN 1	354	507	-	-
	Vra11g0654	508	MobiDBLite	consensus disorder prediction	392	420	-	-
	Vra11g0654	508	MobiDBLite	consensus disorder prediction	275	296	-	-
	Vra11g0654	508	MobiDBLite	consensus disorder prediction	356	379	-	-
	Vra11g0654	508	MobiDBLite	consensus disorder prediction	117	144	-	-
	Vra11g0654	508	MobiDBLite	consensus disorder prediction	392	406	-	-
	Vra11g0654	508	PANTHER	BES1/BZR1 HOMOLOG PROTEIN 3-RELATED	1	77	IPR033264	GO:0003700\|GO:0006351\|GO:0009742
	Vra11g0654	508	PANTHER	BES1/BZR1 HOMOLOG PROTEIN 3-RELATED	354	507	IPR033264	GO:0003700\|GO:0006351\|GO:0009742
	Vra11g0654	508	PANTHER	BES1/BZR1 HOMOLOG PROTEIN 3-RELATED	98	218	IPR033264	GO:0003700\|GO:0006351\|GO:0009742
	Vra11g0654	508	PANTHER	BES1/BZR1 HOMOLOG PROTEIN 3-RELATED	275	349	IPR033264	GO:0003700\|GO:0006351\|GO:0009742
	Vra11g0654	508	MobiDBLite	consensus disorder prediction	356	371	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra11g0654	Vra-Chr11	5233327	5240883	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra11g0654	9	75	BZR Transcription Factor Family	AT1G75080	85.075	4.19e-25	104

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	BES1	Vra11g0654		BES1_N	1.8e-48	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra11g0654	K14503		-	pvu:PHAVU_002G0267000	285.419