Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0647 ATGACGAGTGGTTTTGGGGAATCAACGAGAGCGTCTGCTCCCAGCCCGTCATGCTCGGGTAACAGTTCAAACGATGCTGGTGATTTTGAGTGCAACATATGCTTCGATTTGGCGCAAGAACCCGTGATCACGCTCTGTGGTCACCTATTCTGTTGGCCATGCCTTTATAGGTGGCTCCATCATCATTCCCATTCTCAGGAGTGCCCTGTTTGCAAGGCCCTTGTGCAGGAGGAGAAATTGGTGCCTCTTTATGGAAGGGGCAAAACACAGACTGATCCCAGGACCAAATCATATCCTGGAATGGAGATCCCTCACCGTCCTTCGGGGCAGAGGCCACAAACTGCGCCGCCCCCACCTCCTCCCGAGACTAACCCTTTTGGGAGTTATGGGTTTGGACTCATGGGAGGGTTCATTCCCATGGCAACTGCCAGATTTGGGAACTTCACACTTTCCACCGCCTTTGCTGGGTTTATCCCATCACTGCTCAACATTCATTTCCATGGCTTTCAGGATGCCACTGTCTACGGGACAACTTCTGGTTATCCCTTTGGGTTTAATAGCTTTCACGGAGGGGGTGCACGGGGGTATCATCAGGCAACTGGGGGCCAAGTGCAACGGCAGGAAGACAATGTTTTGAAGAATCTGCTTATGTTGATTGGGTTTCTTGTCCTCCTTACTGTTATTTTTGTGTGGTAA 696 0.5086 MTSGFGESTRASAPSPSCSGNSSNDAGDFECNICFDLAQEPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKTQTDPRTKSYPGMEIPHRPSGQRPQTAPPPPPPETNPFGSYGFGLMGGFIPMATARFGNFTLSTAFAGFIPSLLNIHFHGFQDATVYGTTSGYPFGFNSFHGGGARGYHQATGGQVQRQEDNVLKNLLMLIGFLVLLTVIFVW* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0647 231 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Vra11g0647 231 MobiDBLite consensus disorder prediction 1 20 - -
Vra11g0647 231 MobiDBLite consensus disorder prediction 110 125 - -
Vra11g0647 231 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Vra11g0647 231 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Vra11g0647 231 SUPERFAMILY RING/U-box 27 84 - -
Vra11g0647 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 229 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vra11g0647 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 94 IPR013083 -
Vra11g0647 231 MobiDBLite consensus disorder prediction 84 125 - -
Vra11g0647 231 CDD RING-HC_AtRMA_like 29 73 - -
Vra11g0647 231 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 229 - -
Vra11g0647 231 SMART ring_2 31 71 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0647 Vra-Chr11 5174039 5175414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0647 21 229 C3H Transcription Factor Family AT2G23780 62.500 4.97e-87 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0647 K10666 - gmx:100814783 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0647 11 5174039 5175414 Vra11g0647 11 5174039 5175414 ECH