Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0643 ATGCATCTCTTTCCCTTCACTCTCATTATCCTCTTCATCGTTTTGATGCACAACTTCTCTCTGATTCTGGGGCAGCAACCTTATATTGGTTTAGGCACAGTAGCATGCCCTAGAAGAGGTAACAAAAACTCTATTCGTGGATACACTTGCAATGGTGCAAACAGCTGCCAAGCATTCCTTACTTTTAGATCTCAACCCATTTACGACTCTGTCTCCACAATATCTACTTTATTGGGTTCTGACCCCTCCCAACTTGCTAAAATAAACTCCGTTTCCCTGAATGACACCTTCGAAACAAACAAGTTGGTGCTTGTTCCGGTCAACTGTTCCTGTGCAGGTCAGTATTATCAAACAAACACATCCTATGTGTTCCAGAATGCAGAAACTTACTTCTTGATTGCTAACAACACTTTCGAGGGCCTCACAACATGTCAAGCTTTGCAGAACCAAAACCACAACCCAGCAAACATATATCCCGGCAGAAAACTTCTAGTGCCTCTCCGATGTGCTTGCCCCACAAAAAACCAAACCGAGAAAGGCATCAAGTACCTCTTAAGCTATTTGGTGAATTGGGGTGATTCTGTTTCACTCATTGCTGACAAATTTGGTGTTGGTTCTGTGACCACTCTTGAGGCTAATAACCTCACTTTGACACAATCCACGATCTATCCCTTTACTACACTTCTAATTCCCCTTCATGATAAGCCCTCAAGTCCTCAAACCGTTTCTCCAGCTCAACTTACGCCACCACCCTCATCACCCCCCTCTTCTCATAAAAAGAAAACATGGGTGTATGTTGTTGTTGGAGTTGTTGCAGGAGCTGTTGCCTTAACATCAGCTCTCTGTACTGTCATTTTCTTCACACGGAGGGGGAAAAATAGAAACGAAGATGATTCGATGGTAGTGTCAAGGAGTTTTGAGGCAACTAAGAAAAAACCACCAATGAGTGTAAATGAAAAATTGTCAGAGATCATATCTGGCATAGCTCAATCGTTCAAGGTTTATGATTTTGAGGAACTAAAGCGAGCAACAGATAACTTTAGTCCTAGCTACTGGATCAAAGGGTCTGTTTATCGCGGTGTGATTAATGGTGATTTGGCTGCAATTAAAAAGATAGAAGGTGATGTGACAAAGGAGATGGAGATACTGAGCAAAATCAACCATTCGAATGTTGTACGCCTTTCCGGGGTTAGCTTCCACGAGGGACGTTGGTACTTTGTTTATGAGTATGCTGCTAATGGAGATTTGAGTGAATGGATCTACTTCAACAACGCGGATGGGAAGTTTCTGAGTTGGACGCAGAGAATACAGATTGCATTGGATGTGGCCACAGGAATTGATTATCTTCACAGTTTCAGTTCTCCTTATATCCACAAGGATATTAAGAGTACTAACATTCTTCTGGATGGTGACTTCAGGGGAAAGGTCGCAAATTTAAGGCTTGTGAGGCGTGTGGAAGGAGGGGATGACCAGTTTCCTGCCACTAGGCACATTGTTGGGACAAGAGGCTACATGGCTCCCGAGTATTTGGAACATGGTCTTGTGTCTACAAAGCTTGATGTGTATGCTTTTGGGGTAGTGATGCTGGAAATGATCACAGGAAAAGAGGTTGCTGCTATTGTAACAGAAGACGAGACAAACTTGTCACATGTTTTGCGAGTCATGCTTGGCGAGGAGAGTGGGCAGGAGAGGTTGAAGGAGTTTGTGGATCCCTCTTTGCGAGAAAATTTTCCATCTGAACTTGGTATGTTTGTGGTTGAGATGATTGATAATTGCATATCGATTGATCCAGCAAGTCGTCCTAGTGTGCATGAGATTGTGCAATCTCTGTCAAGAACCCTGAATTCTTCATTGAGTTGGGAAAGGTCAATGAATGTCCCACGAAGCTAA 1890 0.4317 MHLFPFTLIILFIVLMHNFSLILGQQPYIGLGTVACPRRGNKNSIRGYTCNGANSCQAFLTFRSQPIYDSVSTISTLLGSDPSQLAKINSVSLNDTFETNKLVLVPVNCSCAGQYYQTNTSYVFQNAETYFLIANNTFEGLTTCQALQNQNHNPANIYPGRKLLVPLRCACPTKNQTEKGIKYLLSYLVNWGDSVSLIADKFGVGSVTTLEANNLTLTQSTIYPFTTLLIPLHDKPSSPQTVSPAQLTPPPSSPPSSHKKKTWVYVVVGVVAGAVALTSALCTVIFFTRRGKNRNEDDSMVVSRSFEATKKKPPMSVNEKLSEIISGIAQSFKVYDFEELKRATDNFSPSYWIKGSVYRGVINGDLAAIKKIEGDVTKEMEILSKINHSNVVRLSGVSFHEGRWYFVYEYAANGDLSEWIYFNNADGKFLSWTQRIQIALDVATGIDYLHSFSSPYIHKDIKSTNILLDGDFRGKVANLRLVRRVEGGDDQFPATRHIVGTRGYMAPEYLEHGLVSTKLDVYAFGVVMLEMITGKEVAAIVTEDETNLSHVLRVMLGEESGQERLKEFVDPSLRENFPSELGMFVVEMIDNCISIDPASRPSVHEIVQSLSRTLNSSLSWERSMNVPRS* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0643 629 ProSiteProfiles Protein kinase domain profile. 326 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0643 629 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 6 625 - -
Vra11g0643 629 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 4 6 625 - -
Vra11g0643 629 SMART LysM_2 121 166 IPR018392 -
Vra11g0643 629 SMART LysM_2 186 231 IPR018392 -
Vra11g0643 629 ProSiteProfiles LysM domain profile. 185 230 IPR018392 -
Vra11g0643 629 MobiDBLite consensus disorder prediction 236 259 - -
Vra11g0643 629 Gene3D LysM domain 185 242 IPR036779 -
Vra11g0643 629 Pfam LysM domain 187 231 IPR018392 -
Vra11g0643 629 Pfam LysM domain 122 166 IPR018392 -
Vra11g0643 629 Gene3D Phosphorylase Kinase; domain 1 318 410 - -
Vra11g0643 629 Pfam Protein kinase domain 357 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0643 629 Gene3D Transferase(Phosphotransferase) domain 1 411 623 - -
Vra11g0643 629 ProSiteProfiles LysM domain profile. 120 165 IPR018392 -
Vra11g0643 629 SUPERFAMILY Protein kinase-like (PK-like) 330 610 IPR011009 -
Vra11g0643 629 CDD LysM 186 230 IPR018392 -
Vra11g0643 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Vra11g0643 629 SMART serkin_6 352 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0643 Vra-Chr11 5142485 5144720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0643 3 623 Receptor kinase-like Gene Family AT2G23770 42.700 6.62e-169 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vra11g0643 Pkinase 1.9e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0643 - - gmx:100815842 1040.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0643 11 5142485 5144720 Vra11g0643 11 5142485 5144720 ECH