Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0642 ATGAAACAAACAGGACCATATTTTTATATTATACCAAATGATACTTTTATTGACAAAGAACTCTACATATCAACAGAGACGATTGCCACTGACAGTAGACTACCTCAACTTACATTTGATCACAACCTCACATCAATGGCTGCCTTGTTTGTTTCTCTTTCTCTCCGTGCCCAGATTATTTATGTTGTACTCCTGTTTTTCACTTGTATTGCAGCTCAATCAGAACAGACCAATGGAACAAACTTTTCATGCCCTTCCGATTCACCTCCTTCGTGTGAAACCTATGTGACATACATAACTCAGTCTCCAAATTTTTTGAGTGTGACCAGCGTATCTAATATATTTGACACGAGTCCTTTGAAAATTGCAAGAGCCAGCAACATAGAGAGTGAGGAAGACAAGTTGATTCCAGGCCAAGTCTTACTGATACCAGTAACCTGTGGCTGCACTGGAAACCGCTATTTCGCCAATATCTCCTATGAAATCAACCCAGGTGATAGCTTCTACTTTATTTCAACCACTTCATACCAGAATCTCACAAATTGGCATGTAGTGATGGATTTAAACCCCAGTCTAAGTCCATATACTTTGCCAGTAGGCATCCAAGTTGTAATTCCTTTATTCTGCAAGTGTCCTTCAAAGAACCAGCTTGACAGAGGGATAAAGTACCTGATCACTCACGTGTGGCAACCCAGTGACAATGTTTCCCTCGTAAGCAACAAGTTTGGTGCTTCACCAGAGGACATATTAAGTGAAAACAATTATGGTCAAAACTTCACTGCCGCAAACAACCTTCCAGTTTTGATCCCAGTTACACGCTTGCCAGATCTTATTCAATCTCCTTCAGATGGAAGAAAACACAGAATTGGTCTTCCAGTCATAATTGGTATCAGTCTGGGATGCACACTACTGGTTGTGGTTTCAGCAATATTACTGGTGTATGTATGTTTTCTGAAAATGAAGAGTTTGAATAGCAGTGCCTCATCAGCTGAAACTGTAGATAAACTACTTTCTGGAGTTTCAGGCTACGTAAGTAAGCCTACCATGTATGAAACTGGTGCAATCTTGGAAGCTACCATGAACCTCAGTGAGCAGTGCAAGATTGGGGAATCAGTGTACAAGGCTAACATAGACGGGAAGGTTTTAGCAATAAAAAGATTCAAGGAAGATGTCACGGAGGAGCTGAAAATTCTGCAGAAGGTGAGCCATGGAAATCTGGTGAAACTAATGGGTGTCTCATCAGACAATGATGGAAATTGTTTTGTGGTTTATGAATATGCTGAAAATAGGTCTCTTGATGACTGGCTTTTCGCCAAGTCTTGTTCAGAGACATCAAACTCAAGGACCACGCTTACATGGTGCCAGAGGATAAGCATAGCAGTGGATGTTGCCATGGGTCTGCAGTACATGCATGAACATGCTTATCCAAGAATAGTCCACAGGGACATCACCAGCAGTAATATCCTTCTTGACTCTAACTTCAAGGCCAAGATAGCAAATTTTTCCATGGCCAGAACTTTTACCAACCCCATGATGTCAAAAATAGATGTATTTGCTTTTGGGGTGGTTCTGATAGAATTACTTACTGGCAAGAAAGCCATGACAACCAAAGATAATGGTGAGGTGGTTATGCTGTGGAAGGAAATCTGGAAGATCTTTGATCAAGAAGAGAATAGAGAGGAGAGGCTCAGAAAATGGATGGATCCTAAGTTAGAAAATTATTATCCTATTGATTATGCTCTCAGCTTGGCCTCCTTGGCAGTGAATTGTACTGCAGACAAGTCTTTGTCCAGACCAACCTTAGCAGAAATTGTACTTAGTCTCTCCCTTCTCACTCAACCATCTTCCTCGAGACTGGAGAGATCCTTGACTTCTTCTGGATTAGATATAGAAGCTACTCAAATTGTCACTTCCATCGCAGCTCGTTGA 1929 0.4116 MKQTGPYFYIIPNDTFIDKELYISTETIATDSRLPQLTFDHNLTSMAALFVSLSLRAQIIYVVLLFFTCIAAQSEQTNGTNFSCPSDSPPSCETYVTYITQSPNFLSVTSVSNIFDTSPLKIARASNIESEEDKLIPGQVLLIPVTCGCTGNRYFANISYEINPGDSFYFISTTSYQNLTNWHVVMDLNPSLSPYTLPVGIQVVIPLFCKCPSKNQLDRGIKYLITHVWQPSDNVSLVSNKFGASPEDILSENNYGQNFTAANNLPVLIPVTRLPDLIQSPSDGRKHRIGLPVIIGISLGCTLLVVVSAILLVYVCFLKMKSLNSSASSAETVDKLLSGVSGYVSKPTMYETGAILEATMNLSEQCKIGESVYKANIDGKVLAIKRFKEDVTEELKILQKVSHGNLVKLMGVSSDNDGNCFVVYEYAENRSLDDWLFAKSCSETSNSRTTLTWCQRISIAVDVAMGLQYMHEHAYPRIVHRDITSSNILLDSNFKAKIANFSMARTFTNPMMSKIDVFAFGVVLIELLTGKKAMTTKDNGEVVMLWKEIWKIFDQEENREERLRKWMDPKLENYYPIDYALSLASLAVNCTADKSLSRPTLAEIVLSLSLLTQPSSSRLERSLTSSGLDIEATQIVTSIAAR* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0642 642 Pfam LysM domain 108 144 IPR018392 -
Vra11g0642 642 ProSiteProfiles LysM domain profile. 96 143 IPR018392 -
Vra11g0642 642 PANTHER SERINE/THREONINE RECEPTOR-LIKE KINASE NFP 64 642 - -
Vra11g0642 642 ProSitePatterns Tyrosine protein kinases specific active-site signature. 478 490 IPR008266 GO:0004672|GO:0006468
Vra11g0642 642 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 64 642 - -
Vra11g0642 642 Pfam Protein tyrosine and serine/threonine kinase 387 508 IPR001245 GO:0004672|GO:0006468
Vra11g0642 642 ProSiteProfiles Protein kinase domain profile. 330 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0642 642 Gene3D Phosphorylase Kinase; domain 1 339 426 - -
Vra11g0642 642 SUPERFAMILY Protein kinase-like (PK-like) 359 608 IPR011009 -
Vra11g0642 642 Gene3D Transferase(Phosphotransferase) domain 1 511 624 - -
Vra11g0642 642 Gene3D Transferase(Phosphotransferase) domain 1 427 510 - -
Vra11g0642 642 SMART LysM_2 97 144 IPR018392 -
Vra11g0642 642 SMART LysM_2 159 206 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0642 Vra-Chr11 5134764 5137749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0642 126 611 Receptor kinase-like Gene Family AT3G21630 30.203 6.02e-68 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vra11g0642 PK_Tyr_Ser-Thr 1.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0642 - - vra:106777834 1261.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0642 11 5134764 5137749 Vra11g0642 11 5134764 5137749 ECH