Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0639 ATGGGTTGGTTTAGAAAGTTGCTTAAAGGTTGTGATCATATTTCACGTGGACAATACCAAGGAAAATATGGAGAAGACAGAATTTGGGATACCCATCGTAGTTCAATGGATGATTTAACAGATATAGAGAAAGAAGACATTGACCGTGCAATTGCACTCTCTCTGTCAGAGGAGGATCATCTTAAAGGGAAAAAAGTTGTTGAGGATGACTCTCAGTCTGAAGATGATAAACTCTGTAATATTGACGATGAGGAAGATGAATATCTTGCTAAAATTCAGCAAGAAGATGAATATCTTGCTAAAATTCAACAAGAAGAGGATGAACGTCTTGCTAAAATTCAACAAGAACATGAACGTCTTGCTAAACTTCAACAAGACGAAGATGAACGTGTGGCTAAAATTCAACAAGAACATGAGCATCTTGCTAAACTACAACAAGATGAGGATGAACGTCTGGCTAAAATTCAACAAGATGAAGCTGAACATCTTGCTAAAGCTCAACTTGAGGAAGACGAGCAACTTGCTCGGGCAATTCAAGAAAGTTTGACCATTGGTTCTCCTCCTCGATCAGACAATGAATCTTCATTTCTATCTTATCCTCACCTCTTTCCCCCTGGATACAGAATCTGTGCTGGGTGCAAGACTGAGATTGGGCATGGAAGATTTTTAAGTTGCATGGGAGGTGTTTGGCATCCAGAATGCTTCTGCTGCCACGCCTGTCGTCTGCCAATAACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAATCATGCTATAGGGAGAAGCATCACCCCAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCATCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTGCAAAAATACTGCCCATCTCATGAGCTTGATGGCACACCTCGTTGCTGTAGCTGTGAAAGAATGGAGCCAAGGGATGCAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAATTTTATGAAGGTCTAAATATGAAATTGGAGCAGCAAATTCCTATGCTCTTGGTTGAGAGACAAGCTCTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCCGAAACCAGAGGACTCTGTTTGTCAGAAGAGCAAACTGTCACCACTATTTCAAGGAGGCCGAGGATCGGAGCCGGCTACCGAGTCACGGACATGATAACTGAACCCTTCAAGCTGATCCGTCGCTGTGAAGTGACAGCCATTCTAGTTTTGTATGGCCTTCCTAGGTTGTTAACAGGATCAATCCTAGCTCACGAGATGATGCATGCATGGCTTAGGCTTAAAGGCTATCCTAACCTCAGTCCAGAAGTTGAAGAGGGAATCTGCCAAGTGTTGGCTCATATGTGGTTAGATTCAGAGCTGTATTCGGGATCTGGGAATGGCGGTGCATCATCATCCTCGTCTTCATCTTCATCTTCATCATCACCTTCCTCCTCTTCTGCATCATCAAAGAAGGGTAAACGTTCCGACTTTGAGAAGAAACTTGGTGAGTTTTTTAAACACCAGATTGAATCAGATACCTCCTCAGCTTATGGAGATGGATTCAGATCGGGTAACAAAGCAATGCTCAAGTATGGGCTCAAAAGCACCCTTGATCATATCCATATGACAGGAAGTTTTCCATACTGA 1746 0.4233 MGWFRKLLKGCDHISRGQYQGKYGEDRIWDTHRSSMDDLTDIEKEDIDRAIALSLSEEDHLKGKKVVEDDSQSEDDKLCNIDDEEDEYLAKIQQEDEYLAKIQQEEDERLAKIQQEHERLAKLQQDEDERVAKIQQEHEHLAKLQQDEDERLAKIQQDEAEHLAKAQLEEDEQLARAIQESLTIGSPPRSDNESSFLSYPHLFPPGYRICAGCKTEIGHGRFLSCMGGVWHPECFCCHACRLPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPRIGAGYRVTDMITEPFKLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSELYSGSGNGGASSSSSSSSSSSSPSSSSASSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRSGNKAMLKYGLKSTLDHIHMTGSFPY* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0639 581 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 235 - -
Vra11g0639 581 CDD LIM_DA1 210 262 - -
Vra11g0639 581 MobiDBLite consensus disorder prediction 499 523 - -
Vra11g0639 581 PANTHER PROTEIN DA1-RELATED 2 126 581 IPR045218 -
Vra11g0639 581 PANTHER PROTEIN DA1-RELATED 2 1 125 IPR045218 -
Vra11g0639 581 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 293 - -
Vra11g0639 581 SMART uim 42 61 IPR003903 -
Vra11g0639 581 SMART uim 169 188 IPR003903 -
Vra11g0639 581 SMART lim_4 209 261 IPR001781 -
Vra11g0639 581 Coils Coil 103 130 - -
Vra11g0639 581 ProSitePatterns LIM zinc-binding domain signature. 210 244 IPR001781 -
Vra11g0639 581 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 169 182 IPR003903 -
Vra11g0639 581 Gene3D Cysteine Rich Protein 204 268 - -
Vra11g0639 581 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 125 - -
Vra11g0639 581 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 126 581 - -
Vra11g0639 581 MobiDBLite consensus disorder prediction 499 527 - -
Vra11g0639 581 ProSiteProfiles LIM domain profile. 208 268 IPR001781 -
Vra11g0639 581 Pfam Protein DA1 359 576 IPR022087 -
Vra11g0639 581 Pfam LIM domain 210 265 IPR001781 -
Vra11g0639 581 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0639 Vra-Chr11 5089258 5095367 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra11g0639 DA1-like 4.1e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0639 - - vra:106777867 1159.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0639 11 5089258 5095367 Vra11g0639 11 5089258 5095367 ECH
Vra11g0639 11 5089258 5095367 Vra7g1085 7 26482321 26487144 PCT