Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0638 ATGTCCCAAGATTTTCAATCAGGAATCTTCAGCTTCCCGAATGGGTTGGAGAGAGGAAGGGTGAGTCCACAGCAGCAGATCCGGAGGGACAAAGTAAGGTTGCAAGGAGGGTTCGAGGCAGCGCCATTGGTTGGGATAGAAGAAGAGGAACCGGTGTACGAGACTGCCGGGATGTTGTCCGAGATGTTCAATTTTCCGCCTTCGGCTGCGGCGGAATTGATGGAGCAGCAGCCTGTGACGGCCACGTTTAGGGCGGCGAGGCAAACCGGAGAGTGGTACGGAAACAGACAGCAACAAGGGGTGAATATGATGATGGGTGGATTGGGGGATTCGAAGAACCAAAACGGTGTGAATAACAACCAGCATCAAGCACAACACCAGATTTCAAGCATTAATGCTGACTCAGCAGCTGCCATGCAGCTTTTTCTGATGAACCCTCAAACGAGGTCGCCTTCCCCTCCTCAAAGCCACGCCACTCCTTCTTCAACACTCCACATGTTGCTTCCCAATCCTTCTTCCAATTCCCTCCAAGGTTTCACCGGTTCGGCGGTGGGAGGGTCTTTTGGGCAATTCACATGGGTTCCTGAGAGTGCTCATCAGCAAGGAGGCGTGATGGAAGGGCAAGGTCTTTCGCTATCGTTGTCTTCTTCTCTGGAAGCAGCGAAAGCCGAGGAATTGAGGATGGGGGACAGTGGTTTTCTATATTACAATCATCAACAAGGGGGTGGTGTGGGAGCTGGTGCTTCTTCTTCTTCTTCAACAGTTCAATTTCCGTACAAGAACAACAGTCATCACCAAGCATTGCATTTGCAAGGGGTGATAGGACACGACAACAACCAGCAGGGACATGTTGGGTTCGGCTCATCCTCGTTAGGTGTAGTTAATGTTCTGAGAAACACAAAGTATGTGAAGGCTGCACAAGAGTTGCTTGAAGAGTTTTGCAGTGTTGGGAGGGGTCAGTTTAAGAAGAACAAGTTGAATAGGCAAAATTCAAACCCTAATTCAAATCCCGATGGAGGTGGTGGTGGTGGTGGTTCTTCGCCTTCGTCAAAAGATGCCGGTATTCCTCCTCCTCCTTTGTCAGCCGGTGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCAATGCTGGACGAGGTGGACAGGAGATACAACCATTACTGCGAGCAGATGCAAATGGTGGTGAACTCATTTGACCTGATGATGGGTTTCGGTGCGGCGGTTCCATACACAGCGCTGGCGCAGAAAGCAATGTCTCGGCATTTCCGGTGTCTGAAGGACGCAATAACATCACAGCTGAAGCAAAGTTGCGAGCTACTGGGAGAGAAAGAAGGGGCGGGGACCTCAGGTTTGACCAAGGGTGAGACCCCAAGGCTTAAGGTTCTTGAGCAAAGCCTAAGACAGCAGAGAGCCTTCCATCAGATGGGGATGATGGAACAAGAAGCTTGGAGACCCCAGAGAGGCTTGCCTGAACGATCTGTCAACATTTTGAGAGCTTGGCTTTTCGAACATTTTCTCCATCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGACTATCGCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAACTTAAAGAAGCAGAGAGTACAGAAGAGAGAGAAAATAACCAAAGCAACAACAGCAATATCAGTGGGAACCAAGCACAAACTCCAAGCACACCAGGAGCAGCTACGACGTCAACAGCAACAACAGCTGCACCACCAACAATCACAACAACAAAACCAACAGGAAAAAAATCCGATATCAATGCCACCGAAAGCGACTCATCACTTGTTGCAATGAATAGACAGGGCTTCTCGGAAAACCAAGGAAAGCAGTCCACCACCACCTCCACCACTGTCATGGCCTCCGTCAGCGCCACCACCTCTGAGATTGCACCACCCGGGTCACAGTGCTTCGACTCAGATCTGCCCCCACAGAGATTAATGGCCACTGATGACACGTGTCGCTTGGTCACAGCAGATTTTGGGACCGCGTCTGCAAGTGCTGACATTGGATCCACACTCATTAGATTTGGGACCACAGTTGGTGACGTGTCACTCACCCTAGGGCTTCGCCATGCCGGGAACATGCCGGAGAAAACTCCTTTCTCTGTTAGAGACTTTGGAGCCATTTAA 2211 0.5007 MSQDFQSGIFSFPNGLERGRVSPQQQIRRDKVRLQGGFEAAPLVGIEEEEPVYETAGMLSEMFNFPPSAAAELMEQQPVTATFRAARQTGEWYGNRQQQGVNMMMGGLGDSKNQNGVNNNQHQAQHQISSINADSAAAMQLFLMNPQTRSPSPPQSHATPSSTLHMLLPNPSSNSLQGFTGSAVGGSFGQFTWVPESAHQQGGVMEGQGLSLSLSSSLEAAKAEELRMGDSGFLYYNHQQGGGVGAGASSSSSTVQFPYKNNSHHQALHLQGVIGHDNNQQGHVGFGSSSLGVVNVLRNTKYVKAAQELLEEFCSVGRGQFKKNKLNRQNSNPNSNPDGGGGGGGSSPSSKDAGIPPPPLSAGDRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKDAITSQLKQSCELLGEKEGAGTSGLTKGETPRLKVLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELKEAESTEERENNQSNNSNISGNQAQTPSTPGAATTSTATTAAPPTITTTKPTGKKSDINATESDSSLVAMNRQGFSENQGKQSTTTSTTVMASVSATTSEIAPPGSQCFDSDLPPQRLMATDDTCRLVTADFGTASASADIGSTLIRFGTTVGDVSLTLGLRHAGNMPEKTPFSVRDFGAI* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0638 736 Gene3D - 488 550 - -
Vra11g0638 736 Pfam Homeobox KN domain 502 541 IPR008422 GO:0003677|GO:0006355
Vra11g0638 736 MobiDBLite consensus disorder prediction 324 368 - -
Vra11g0638 736 SMART prehox3 291 433 IPR006563 -
Vra11g0638 736 SMART HOX_1 485 549 IPR001356 GO:0003677
Vra11g0638 736 CDD homeodomain 485 546 IPR001356 GO:0003677
Vra11g0638 736 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 47 725 - -
Vra11g0638 736 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 47 725 - -
Vra11g0638 736 SUPERFAMILY Homeodomain-like 487 552 IPR009057 -
Vra11g0638 736 MobiDBLite consensus disorder prediction 554 615 - -
Vra11g0638 736 MobiDBLite consensus disorder prediction 324 343 - -
Vra11g0638 736 ProSiteProfiles 'Homeobox' domain profile. 482 545 IPR001356 GO:0003677
Vra11g0638 736 Pfam Associated with HOX 296 432 IPR006563 -
Vra11g0638 736 MobiDBLite consensus disorder prediction 565 615 - -
Vra11g0638 736 Coils Coil 548 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0638 Vra-Chr11 5066482 5073832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0638 291 734 Homeobox Transcription Factor Family AT2G23760 55.200 5.02e-153 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vra11g0638 POX 4e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0638 - - gmx:100786231 1075.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0638 11 5066482 5073832 Vra11g0638 11 5066482 5073832 ECH
Vra11g0638 11 5066482 5073832 Vra7g1086 7 26548121 26556158 PCT