Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0636 ATGGAAGTGCTTTGTTCTGGTGTTCAATATGCTGGGGAGTCTGATTGTGCTCAGCAGAGTTCAGGAACTGCTTTTGTATATCAAGAAGAAACTAATTGTGCAGAAAGTGGTGGGCAAGACAAACTGGTAGCTGGTCTGCTGAACGAATCATCACATAAAATGCAAGGGCCTCAAATAGAAAGGCAAGGTGGTTTGTCAACTAATTCAGATTGCCAATGCATTGGAGCTTCATGTTGTGACTGTCAAGTGGATGATCAAAATGAATATTGTGGTTTCCATGATTTTGAAGAAGACATTATGAATGAACCTTGTTTAACATCTGACAACTCTATCTCTGTTGTTGATACAATTGAAAGTGAATCACCAAACAACAGTCGGGAAGGAGACTTGTCATGTTCTGAACCCAAGTGGCTTGAGGGGGATGGATCAGTGGCATTGTGGGTCAAGTGGAGGGGGAAGTGGCAGGCTGGTATCCGGTGTGCAAGGGCTGACTGGCCGTTATCAACGTTGAAAGCAAAACCAACACATGAAAGAAAGAAATACTTTGTTATATTCTTTCCACACACAAGGATTTATTCTTGGGCAGACATGCTGCTCGTTAGATCAATTAACGACTTTCCCCATCCCATTGCATATAAGACTCATCAGGTGGGACTCAAAATGGTTAAAGACTTAACTGTAGCACGGCGGTTTATTATGCGAAAGCTGGTTGTTGGCATGCTGAACATGGTCGACCAGTTTCCTTTTAATGCTTTGACAGAAACTGCTCGTGATATGAAGGTCTGGAAGGAGTTTGCCATGGAGGCTTCTCGTTGTAATGGTTATTCTGATTTTGGGAGAATGCTTCTAAAGCTGCATAGTAGCATACTGCAGCACCATATAAATGTTGACTGGTTCCGGCATTCTTATACCTCTTGGACTGAAAGATGTCAGAGTGCCAATAGTGCTGACTCAGTGGAGCTACTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGGGATCAATACTCTCTCTGATGCACCAGTGCAATCAACATTAAGTTCTGAATGGAAAACCTGGAAGCATGATGTAATGAAATGGTTTATGACACCACCTTCCTTATCGATCAGCAAAGACACACAGCAACAGAGTTATGATGATTTGTTCCCAGCAAACCTTCAGGTTTGTAGAAAAAGGGCCAAGCTTGAAGTTCGTCGTGCAGATACACATGCTTCACAAGTGGAAATCAAGGCTCAAACTGTTGCTCTTCAGGCTGACCCTGGCTTCTTTAAGAATCAGGGCATATTGAGCACATTAGCAGATGAGTCTTGCAAACAGGAAGGTGTTAGGGAGGTGTCTATGGCAGCTGATTCACCTGGTCATTTGGTCGATAAATGGAATGGAATTGTAGTTGAGAATACTGATCCGCATTTTTTGCATACCACACCTACAAAGGAAATGACTGTTGCAAAATCTGTAGAATCTGGTAGTAAGAATCGACAATGCATAGCTTATATTGAAGCAAAGGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTGTACTGTTGTGTACATCTATCTTCCCGATTTTTGGGGAGCTCAACGAAAACTGAAAAGCCTGTTCCACTTGATACTCCTATGTGTGAAGGTACTACTGTTCTGGGTACTAGATGTAAGCATCGTGCCCTACCTGGCTCTTTATTCTGTAAGAAACACCGGCCACATGCTGAAACAGAGCAGATCTCAAATATACCACAGAATACACTAAAGAGAAAACATGAAGAAAATTATACCGGTTCAGAGGGCATTCTCTCGAGAGACTTGGTATTAGTCAATGTTGAAAGTCCACTGCAAATGGATCCAGTGTCATCCATTGGTGGTGATTCCGTCTATGGAGAAAACAACTCTAATGAGAAGCCCATGCATTCTGAACATTATCATAATGCAATGGAGTCACTGCAGTGTATAGGTTCCCCTCCCTATGATAAGATGAATCCTTGCAGGGAAGGTCCTAAACGGTATTGCTTGTATTGTGAAAGTCACCTCCCTAGTTGGCTTAAGCGTGCAAGAAATGGGAAGAGTAGAATAGTATCAAAAGAAGTGTTCACAGAACTTTTGAGGGACTGCAACTCATGGGAGCAAAAGGTACATCTGCATAAAGCATGTGAACTTTTTTACAGGCTTCTTAAAAGCATTTTGTCATTAAGAAACCCTGTTCCTAAGGATGTCCAATTTCAGTGGGCTCTGACTGAAGCCTCTAAAGATTCTAGTGTAGGAGAGTTTTTTAAAAAGTTAGTTCACAGTGAAAAGGCCAGAATCAAATCATTATGGGGATTCAATGATGACATGGATATAACTTCTGTTATGGAAGAACCTCCTCTCTTGCCATCCACAAACGATGATTACTATGATAAGGAAAATGCCATTAAGTGTAAGCTATGCTCTGCAGAATTTCCTGATGACCAAGAGCTTGGTAACCATTGGATGGACAGTCATAAAAAGGAGGCACAGTGGCTATTTAGAGGCTATGCATGTGCCATTTGTCTGGATTCATTTACTAACAAGAAACTGTTGGAAACGCATGTTCAGGAGAGGCACCATGTGCAATTTGTTGAACAATGCATGCTTCTCCAATGCATCCCTTGTGGGAGTCATTTTGGAAATACCGAACAATTATGGCAGCATGTTTTATCAGTTCATCCTGTTGATTTTAAACCATCAAAAGCTCCTGAGCAGCAAACTTTATCTACTGGTGAAGATTCTCCAGTAAATCGTGATCAGGGTAATTCAGCCCCTTTGGAGAATAATTCTGAGAATACAGGTGGTTTTCGGAAATTTGTTTGCAGGTTTTGCGGGTTGAAATTTGATTTACTACCTGACCTAGGTCGACATCACCAAGCTGCTCATATGGGGCCTAATCTGGCCAGCAGTCGCCCTGCAAAGAGGGGAGTTCGATATTATGCTTACAGATTAAAATCTGGCAGACTTAGCCGCCCAAGATTTAAAAAAAGTTTGGCAGCAGCATCATACAGGCTTAGAAATAAGGCTAATGCTAATTTAAAGCGAAGCATTCAGGAAACAAATTCACATGGCACAGGGGGAATAACCGGGCAACCTCATGTTGCTGAAACAACAAACATTGGTAGATTGGCAGAACATCAATGCTCAGCTGTTTCAAAGATTTTGTTTTCAGAGATTCAGAAGACGAAACCTCGTCCAAACCATCTTGATATTTTATCAATCGCTCGCTCTGCTTGCTGCAAAGTTAGTCTTGTAGCATCATTGGAGGAGAAATATGGAATTCTTCCTGAAAAGCTCTATTTGAAGGCAGCAAAACTTTGCAGTGAGCATAATATTTTGGTAAGTTGGCATCGGGAGGGTTTTATTTGTCCTAGTGGTTGTAATGTATCAAAGGGTCAAGTTTTGCTCTCTCCTTTAGAGTCTCTTCCTAATAGTTCTGTAATGCCCAAATCTGGGAATTCAACTGATCCTACAAGTGACGAGTGGGAGGTGGATGAATTTCACTGCATCATCAATTCACGAACTTTAAAGTTAGGTTCACTGCAAAAAGCTGTAGTCTTGTGTGATGACATTAGCTTTGGGAAGGAATCAATTCCAGTGATTTGTGTGGTAGATCAAGAACTTGTGCATTCTCTTCATATCAATGGCTGTAATGGACAAAATATAAACCCTTCTCGGCCTTGGGAGAGCTTTACCTATGTTACAAAGCCAATGCTCGATCAATCCCTCATTCTTGATTCAGAGAGTCTGCAACTGGGATGTGCCTGTCCATACACCACCTGCAGTCCTGAAACATGTGATCATGTTTACCTTTTCGGCAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCATATGATGAGAATGGTCGAATAATCCTGGAGGAAGGTTATCTTGTCTATGAGTGTAATCAAATGTGCAGATGCAATAAATCCTGTCCAAATAGAGTATTGCAGAATGGTGTACGAGTCAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGCAGTAAGGGCTGGTGAAGCTATTCTACGTGGCACATTTGTGTGTGAATACATTGGAGAAGTTTTAGATATGAAAGAGGCACATGATAGGCGTAGAAGCTATGGCACAGAGCATTGCAGTTATTTCTACGACATTGATGCTCGTGTTAATGATATGAGCAGATTGATTGAAGGACAGGCTCAGTATGTAATTGATGCTACTAAATTTGGAAATGTTTCAAGATTCATCAATCATAGTTGTACCCCAAATCTGGTCAATCACCAAGTTCTTATAGAGAGCATGGATTCTGAACGTGCACATATCGGTTTTTATGCAAATCGGGATATTGCTTTAGGTGAAGAGCTAACATATGACTATCAGTACGAGCATGTGCTTAGTGAAGGATCTCCTTGCCTTTGCGAATCCTTGAAGTGTAGGGGGCGCCTTTATTAG 4470 0.4148 MEVLCSGVQYAGESDCAQQSSGTAFVYQEETNCAESGGQDKLVAGLLNESSHKMQGPQIERQGGLSTNSDCQCIGASCCDCQVDDQNEYCGFHDFEEDIMNEPCLTSDNSISVVDTIESESPNNSREGDLSCSEPKWLEGDGSVALWVKWRGKWQAGIRCARADWPLSTLKAKPTHERKKYFVIFFPHTRIYSWADMLLVRSINDFPHPIAYKTHQVGLKMVKDLTVARRFIMRKLVVGMLNMVDQFPFNALTETARDMKVWKEFAMEASRCNGYSDFGRMLLKLHSSILQHHINVDWFRHSYTSWTERCQSANSADSVELLKEELFDSILWNGINTLSDAPVQSTLSSEWKTWKHDVMKWFMTPPSLSISKDTQQQSYDDLFPANLQVCRKRAKLEVRRADTHASQVEIKAQTVALQADPGFFKNQGILSTLADESCKQEGVREVSMAADSPGHLVDKWNGIVVENTDPHFLHTTPTKEMTVAKSVESGSKNRQCIAYIEAKGRQCVRWANDGDVYCCVHLSSRFLGSSTKTEKPVPLDTPMCEGTTVLGTRCKHRALPGSLFCKKHRPHAETEQISNIPQNTLKRKHEENYTGSEGILSRDLVLVNVESPLQMDPVSSIGGDSVYGENNSNEKPMHSEHYHNAMESLQCIGSPPYDKMNPCREGPKRYCLYCESHLPSWLKRARNGKSRIVSKEVFTELLRDCNSWEQKVHLHKACELFYRLLKSILSLRNPVPKDVQFQWALTEASKDSSVGEFFKKLVHSEKARIKSLWGFNDDMDITSVMEEPPLLPSTNDDYYDKENAIKCKLCSAEFPDDQELGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNTEQLWQHVLSVHPVDFKPSKAPEQQTLSTGEDSPVNRDQGNSAPLENNSENTGGFRKFVCRFCGLKFDLLPDLGRHHQAAHMGPNLASSRPAKRGVRYYAYRLKSGRLSRPRFKKSLAAASYRLRNKANANLKRSIQETNSHGTGGITGQPHVAETTNIGRLAEHQCSAVSKILFSEIQKTKPRPNHLDILSIARSACCKVSLVASLEEKYGILPEKLYLKAAKLCSEHNILVSWHREGFICPSGCNVSKGQVLLSPLESLPNSSVMPKSGNSTDPTSDEWEVDEFHCIINSRTLKLGSLQKAVVLCDDISFGKESIPVICVVDQELVHSLHINGCNGQNINPSRPWESFTYVTKPMLDQSLILDSESLQLGCACPYTTCSPETCDHVYLFGNDYDDAKDIFGKPMRGRFPYDENGRIILEEGYLVYECNQMCRCNKSCPNRVLQNGVRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLDMKEAHDRRRSYGTEHCSYFYDIDARVNDMSRLIEGQAQYVIDATKFGNVSRFINHSCTPNLVNHQVLIESMDSERAHIGFYANRDIALGEELTYDYQYEHVLSEGSPCLCESLKCRGRLY* 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0636 1489 MobiDBLite consensus disorder prediction 903 933 - -
Vra11g0636 1489 ProSitePatterns Zinc finger C2H2 type domain signature. 875 896 IPR013087 -
Vra11g0636 1489 ProSiteProfiles Post-SET domain profile. 1473 1489 IPR003616 -
Vra11g0636 1489 SMART set_7 1334 1472 IPR001214 GO:0005515
Vra11g0636 1489 Pfam Pre-SET motif 1195 1326 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra11g0636 1489 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1489 - -
Vra11g0636 1489 ProSiteProfiles Pre-SET domain profile. 1255 1331 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra11g0636 1489 SMART preset_2 1191 1318 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra11g0636 1489 SMART c2h2final6 873 896 IPR013087 -
Vra11g0636 1489 SMART c2h2final6 839 862 IPR013087 -
Vra11g0636 1489 SMART c2h2final6 942 965 IPR013087 -
Vra11g0636 1489 SMART c2h2final6 805 828 IPR013087 -
Vra11g0636 1489 Gene3D Classic Zinc Finger 792 865 - -
Vra11g0636 1489 ProSitePatterns Zinc finger C2H2 type domain signature. 944 965 IPR013087 -
Vra11g0636 1489 Pfam Zinc finger C2H2-type, 3 repeats 841 966 IPR040689 -
Vra11g0636 1489 ProSiteProfiles Zinc finger C2H2 type domain profile. 839 862 IPR013087 -
Vra11g0636 1489 Gene3D SET domain 1173 1473 IPR046341 -
Vra11g0636 1489 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1489 - -
Vra11g0636 1489 MobiDBLite consensus disorder prediction 905 933 - -
Vra11g0636 1489 ProSiteProfiles SET domain profile. 1334 1466 IPR001214 GO:0005515
Vra11g0636 1489 SUPERFAMILY SET domain 1183 1479 IPR046341 -
Vra11g0636 1489 Pfam SET domain 1345 1465 IPR001214 GO:0005515
Vra11g0636 1489 ProSitePatterns Zinc finger C2H2 type domain signature. 807 828 IPR013087 -
Vra11g0636 1489 ProSiteProfiles Zinc finger C2H2 type domain profile. 942 970 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0636 Vra-Chr11 5032506 5046440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0636 127 1488 C2H2 Transcription Factor Family AT2G23740 51.831 0.0 1383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra11g0636 Pre-SET 4.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0636 - - gmx:100786757 2667.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0636 11 5032506 5046440 Vra11g0636 11 5032506 5046440 ECH