Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0626 ATGTTTGTTCACCACCGTACGAATCTCGTTGTAGTCCTCACGATCTTGATAGCGTGCACAGCAAGAGCGCAAAACCTCACCTGCAATAGGCAATGCGGGAAGCAGAGTGTTCAGTTCCCTTTCGGATTCTCCGAAGGTTGTGAAATCATACTAAACTGTTCCGACAACAAAGTTCGTCTTCACGAATTTCTGGTCCAAAACGTTACCAACAGCAACATATTAGTCAATCTCCCTGCAAAATGCAACCGCAGCATGGAATCCATTGAGCCACTTTTCGGTAACAATTTTGCTCCCTCTGTTAACAACAGCTTTCTGGTGAAAGATTGCAGCGATGCGTCTCGTGGGTGCGTTATTCCGGCTTCGAATTTTGTGGAAACCTGCGATAATAAAAGTGGTAATATCAGTTGCTTTTCGAAACAAGATGAGGCGGGTGTTCTGACGTACAAAGATTTGAAAGAAACTAAGTGTAATTACTTGTTCTCTGCGATTTATTTTGGGCAGAGCAAGGAGATTACGCTGCAGTTTCAGGTGGTCGAGTTGGCGTGGTGGCTTCAAGGACAGTGTGATGAATGTTCTGAAAACGCTACCTGCTCAAAGGTCCAAAGAGGGTTTCGGTGCCAGTGTATCCATGGTTTCACCGGCGACGGCTTCATAAACGGCACCGGTTGCCGGAAAACTTCGGCTTCAAGTTGCAGTGCATCAACACTGGCTTCCGGGGGATGTGGAAAAGCAACCAAAATCGGCGTTGCTGTTGGAGCGAGCATAGCTGGAGCTTTGGTGGTGGCTGGTCTGTTTCTTCTATGCTACTGTGCTAGGCGCCGCTCTATTTGGTTGGGAAAACATACCAGAGTAAAGCGGCAATTACGTGAAGCTGCAGGAAACTCAAGTATACCTTTCTATCCCTACAAAGAAGTAGAAAAAGCCACAAATTCTTTCTCTGAGAAACACAGGCTGGGAACTGGGGCATTTGGTACAGTTTACGCCGGAAAACTGCACAGTGATGAATGGGTTGCTATCAAGAAGTTAAGGCAAAGAGACACCAACAGTGCTGACCAAGTCATGAATGAGATCAAGCTCCTTTCTTCAGTGAGTCATCCAAATTTAGTTCGCCTCTTAGGTTGCTGCATAGAGAAGGGAGAGCAGATCCTTGTTTATGAATATATGCAAAATGGAACACTTTCTCAGCACTTGCAAAGGGAGAGGAGTGAAGGACTGCCGTGGACAGTAAGACTTACCATAGCTACTGAAACTGCTAATGCTATAGCATATCTCCATTCCGCAATTCACCCCCCAATTTACCACAGAGACATAAAGTCTAGTAATATACTTTTGGATTATCACTTTAAATCTAAGATAGCTGATTTTGGGCTTTCTAGGCTTGGCATGACAGAAACATCTCATATCTCAACCGCTCCACAGGGGACTCCGGGTTATGTGGATCCCCAATACCACCAGAACTTCCATCTTTCTGATAAAAGTGATGTGTACAGTTTTGGAGTGGTCTTGGTAGAGATAATAACTGCCATGAAAGCGGTTGATTTTTCTCGACCTCGGAGTGAGGTTAACTTAGCTGCACTTGCCGTAGATAGGATTAGGAGGGGTGCTGTAGATGAGATCATAGACCCCTTCCTTGAACCACACAGAGATGCTTGGACACTGTATTCTATTCATAAGGTAGCTGAACTTGCATTTAGATGCCTTGCTTTTCACAGTGACATGAGACCTACTATGACGGAAGTGGCAGAGGAGCTAGAACACATTAAACGCAGTGGATGGGCAACTATGGAGGAAACTGCCATGACTTCATCGAATGGATCCACTTGTTCATCACCTCGCAATGGAAGTGAGAAGTCATTGAGTGGTATCAAAAAGGCTGGCCAAGGGAGTTCGAGATTGATAGTTCCCCAGAAGATTGAGAGATTTTTTCATTCTGTGGAGGTGAAAGATAGCTCTCCTGTATCAGTGCATGATCCGATTCATTGGTCGAGTGGACACAGCTCACCTTCGTCAAACAGCTTGTTGGTAAATGTCATCCCTTGA 2040 0.4525 MFVHHRTNLVVVLTILIACTARAQNLTCNRQCGKQSVQFPFGFSEGCEIILNCSDNKVRLHEFLVQNVTNSNILVNLPAKCNRSMESIEPLFGNNFAPSVNNSFLVKDCSDASRGCVIPASNFVETCDNKSGNISCFSKQDEAGVLTYKDLKETKCNYLFSAIYFGQSKEITLQFQVVELAWWLQGQCDECSENATCSKVQRGFRCQCIHGFTGDGFINGTGCRKTSASSCSASTLASGGCGKATKIGVAVGASIAGALVVAGLFLLCYCARRRSIWLGKHTRVKRQLREAAGNSSIPFYPYKEVEKATNSFSEKHRLGTGAFGTVYAGKLHSDEWVAIKKLRQRDTNSADQVMNEIKLLSSVSHPNLVRLLGCCIEKGEQILVYEYMQNGTLSQHLQRERSEGLPWTVRLTIATETANAIAYLHSAIHPPIYHRDIKSSNILLDYHFKSKIADFGLSRLGMTETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKAVDFSRPRSEVNLAALAVDRIRRGAVDEIIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPTMTEVAEELEHIKRSGWATMEETAMTSSNGSTCSSPRNGSEKSLSGIKKAGQGSSRLIVPQKIERFFHSVEVKDSSPVSVHDPIHWSSGHSSPSSNSLLVNVIP* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0626 679 MobiDBLite consensus disorder prediction 660 679 - -
Vra11g0626 679 Pfam Protein tyrosine and serine/threonine kinase 315 584 IPR001245 GO:0004672|GO:0006468
Vra11g0626 679 Gene3D Laminin 181 224 - -
Vra11g0626 679 MobiDBLite consensus disorder prediction 599 625 - -
Vra11g0626 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Vra11g0626 679 ProSitePatterns Protein kinases ATP-binding region signature. 318 341 IPR017441 GO:0005524
Vra11g0626 679 Gene3D Phosphorylase Kinase; domain 1 283 387 - -
Vra11g0626 679 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Vra11g0626 679 MobiDBLite consensus disorder prediction 599 628 - -
Vra11g0626 679 ProSiteProfiles Protein kinase domain profile. 312 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0626 679 SUPERFAMILY Protein kinase-like (PK-like) 292 585 IPR011009 -
Vra11g0626 679 Gene3D Transferase(Phosphotransferase) domain 1 388 607 - -
Vra11g0626 679 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 626 IPR045274 GO:0007166
Vra11g0626 679 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 19 626 - -
Vra11g0626 679 SMART serkin_6 312 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0626 Vra-Chr11 4950775 4955339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0626 1 677 Receptor kinase-like Gene Family AT2G23450 55.524 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vra11g0626 PK_Tyr_Ser-Thr 8.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0626 - - gmx:100779130 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0626 11 4950775 4955339 Vra7g1098 7 26712728 26717469 PCT