Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0607 ATGAATCTCTATCCTCTTCTTCTTTACACCTTCCTTCGTTATCATCTCAAATCAGGGTATGGTATGGTAGTTTGTGATTTGTGGGAGCATACTCTCGCTCACAGAAAATCACCCCATCCCACTCAACAACACTCCAGTGCTTTCATGGAGCTCAGCTTGGACCTGAGTTTGGGCTTTGTCCCCAAACCCATTTCCCTCTTTTTCGCCGATGTTTCTGCCAACAGAAACAACACCGACAAAGTTGCCACGCTGGACGGCTTTGTGCAGAGGTTGGAGGACGAATTGAGGAAAGTTGAGGCCTTCAAACGCGAGCTTCCTCTCTGCATGCTCCTCCTAAACGATGCTATCGCCAGATTGAAAGAGGAAAAAGTAAAGTGTTCAGTACTACAAGATCCGCCTACCAGTGAACAGTTTGTGCCACCGAAAACCAATTCTGGGGGAAGCGAAAATGAAAAATGTGAAAAGAAGAATTGGATGAGTTCAGCTCAACTTTGGAGCACTCAGAAAATCAAATCGACGAATGAGGATGGTGACAGGTCTGTGCCACAGAATCCAATTAATGGGAATTTGTGTGCCCCGAGGAAGGAGGGTTCACAAATTCCGAGCTTTAGTTTGATGGGTCACGGGTCTGAACTGAGTCATAGCAATTCCAAGAGTGTATGTGGAGATACTAGTTCTGGCTCTTCTTTGCTTCGTGTTGAGGTACAGAGCCAGCCCCAACCGCCGCAACATATGCAGCAGAATCCAAGGAAACAGAGGCGGTGCTGGTCACCAGAGCTGCACCGGCGTTTTGTGGATGCTCTTCAACAACTTGGTGGAGCACAAGTGGCCACCCCTAAACAGATTAGAGAACTGATGCAGGTGGACAGCCTGACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGGCTTCATGTTAGGAGATTCCCAGTTTCCTCAGTTGGGCAGGCTGATAATGGGTCATGGATGGGCCAAGATCAATGTGGGAATAAATCAAAGGGAAACTTGTCACAGTCTGGTTCTCCTCAAGGTCCTCTGACACCTCTCTTACTAGGAGGAGGAGGGTCTGCTAAGGGTATCTCAAGCCCTGGACGGAACAGTGTGGATGCAGAAGATGAGCAATCAGATTGCAGGAATTGGAAAGGAGGGCTCCACCAGCACCTTGAAGCTGATAACCAGAGCCTCTAA 1191 0.4786 MNLYPLLLYTFLRYHLKSGYGMVVCDLWEHTLAHRKSPHPTQQHSSAFMELSLDLSLGFVPKPISLFFADVSANRNNTDKVATLDGFVQRLEDELRKVEAFKRELPLCMLLLNDAIARLKEEKVKCSVLQDPPTSEQFVPPKTNSGGSENEKCEKKNWMSSAQLWSTQKIKSTNEDGDRSVPQNPINGNLCAPRKEGSQIPSFSLMGHGSELSHSNSKSVCGDTSSGSSLLRVEVQSQPQPPQHMQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVDSLTNDEVKSHLQKYRLHVRRFPVSSVGQADNGSWMGQDQCGNKSKGNLSQSGSPQGPLTPLLLGGGGSAKGISSPGRNSVDAEDEQSDCRNWKGGLHQHLEADNQSL* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0607 396 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 251 306 IPR006447 GO:0003677
Vra11g0607 396 MobiDBLite consensus disorder prediction 170 187 - -
Vra11g0607 396 MobiDBLite consensus disorder prediction 315 396 - -
Vra11g0607 396 MobiDBLite consensus disorder prediction 130 147 - -
Vra11g0607 396 MobiDBLite consensus disorder prediction 370 386 - -
Vra11g0607 396 MobiDBLite consensus disorder prediction 170 254 - -
Vra11g0607 396 Coils Coil 84 104 - -
Vra11g0607 396 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 47 387 IPR044787 GO:0003700|GO:0006355
Vra11g0607 396 MobiDBLite consensus disorder prediction 130 155 - -
Vra11g0607 396 SUPERFAMILY Homeodomain-like 249 309 IPR009057 -
Vra11g0607 396 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 47 387 - -
Vra11g0607 396 MobiDBLite consensus disorder prediction 315 346 - -
Vra11g0607 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 248 308 IPR017930 -
Vra11g0607 396 Pfam Myb-like DNA-binding domain 253 304 IPR001005 -
Vra11g0607 396 MobiDBLite consensus disorder prediction 203 253 - -
Vra11g0607 396 Gene3D - 250 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0607 Vra-Chr11 4785639 4788040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0607 41 301 G2-like Transcription Factor Family AT4G37180 42.349 2.54e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra11g0607 Myb_DNA-binding 2.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0607 - - pvu:PHAVU_002G021400g 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1123 7 27131976 27134247 Vra11g0607 11 4785639 4788040 PCT