Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0605 ATGTCATCATCATCGAATTCGCCGTGCGCGGCGTGCAAGTTTCTCAGGCGAAAATGCACGCAGGAGTGCGTGTTCGCACCGTACTTTCCGCCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGGGCCAGCAACGTGGCCAAGCTTCTCAATGAACTCAGCGCCTCGCAGCGGGACGACGCCGTAAAGTCCCTCGCTTACGAGGCCGAGGCGCGTCTCAGGGACCCCGTCTACGGCTGCGTGGGCCTCATCTCCGTCCTACAACACAGGCTCAGGCAGATCCAGGTGGAACTCAACAATGCAAAGAAGGAACTCGCAACATACATCGGTCCCCAAGCTTTTCAAGGCTTACCAGCCCCCATTCTCCAGCAGCACCCAAACAACCCGTTTTCCGGTTCCCTGTATGGGAGCATGGCGGGGGTGACGGCAGCCACTCACGGTGGGCAGCTGATGATTCGCGACGGCCAGTCACCGCAGCAGCATCAGATCTTGGAGGCCCAGCAGTTGGCTGCGGCTGTGGCGGCGAGGGAGCAGCAGGAGATGTTCAGGGGTTACGAGCATCAACAGCAGCAGGAGTTTCTTCGGTTCAGTGGTGGGTTCGATGTGGGTTCGGCTTCTTCTGCTGGTGGGTTCAGCCAGATATCCCCAGCTGCTGCTTCCGCTGATCAGTTGTCTCCTTCATTGGCTTTGGGATCCTTCGATAACCCTTATCACATGCAGCCGCCACAGCAAGGAGAGCCTCATCCTCACAACATTCCTTTCGAGGCTCAGCTTCTGCTCCCTCCCCAGCAGAAGCAATCGCCGCAACAAAGCCAGCAGTCCCAACTGCCCCTTCACCAGCCACAGTCTGAAAGCGAGGAGTGTAGGAGTCTTGGTCCATCCTGTTGA 897 0.5808 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSASQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHRLRQIQVELNNAKKELATYIGPQAFQGLPAPILQQHPNNPFSGSLYGSMAGVTAATHGGQLMIRDGQSPQQHQILEAQQLAAAVAAREQQEMFRGYEHQQQQEFLRFSGGFDVGSASSAGGFSQISPAAASADQLSPSLALGSFDNPYHMQPPQQGEPHPHNIPFEAQLLLPPQQKQSPQQSQQSQLPLHQPQSESEECRSLGPSC* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0605 298 Coils Coil 87 107 - -
Vra11g0605 298 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Vra11g0605 298 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Vra11g0605 298 MobiDBLite consensus disorder prediction 230 298 - -
Vra11g0605 298 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 272 - -
Vra11g0605 298 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 3 272 - -
Vra11g0605 298 MobiDBLite consensus disorder prediction 263 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0605 Vra-Chr11 4764929 4768893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0605 3 228 AS2 family AT5G66870 56.000 1.74e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra11g0605 LOB 1.2e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0605 11 4764929 4768893 Vra7g1125 7 27143794 27145721 PCT
Vra7g1124 7 27139462 27140491 Vra11g0605 11 4764929 4768893 PCT