Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0603 ATGGGTCTCTGCACTTCCAAACCTACTCTCTCCTCTACCCAATCTGCCACTCACTCCCCCACTCTACATTCTCAAGACGTGGCCGTCGCAGTCACTCACAGTCACAGTGCCGAACCTCACTTGCGCAGCACCGATGGCGAGAGCGAAAACCCTAAGGAGCCTGAGAACGGTAAGAGATCTCCCTTCTTTCCATTCTACAGTCCGAGTCCGGGTCGCTATGTGTTACCCATCTCGCCGCGCCGCTTCTTCAAACGATCATTTCTGTCGCCCTCGCCGGCGAAGCACATAAGGGCAGCGCTGGCGCGGCGGCACGGGTCGGTGAAACCCAACGAGGCCGCCATACCTGAGACGGAGGGGTTCGCTGGGCTGAACAAGACTTTTGGATTCTCCAAACATTTGGGAAATAAATACGAAGTTGGAGATGAGGTTGGGAGAGGGCATTTTGGATACACTTGTGTTGCTAAGGTGAAGAAAGGAGAGGTGAAGGGACAGCAAGTGGCCGTTAAAGTCATTCCAAAAGCCAAGATGACCACTGCGATTGCTATTGAAGATGTGAGAAGGGAGGTAAAAATTTTGAGAGCTTTGACTACGCACAAGAATCTAGTACAATTCTATGATGCATATGAAGACCATGATAATGTCTATATAGTAATGGAGTTGTGTGAAGGAGGAGAGCTGTTAGACAGAATATTGTCAAGAGGTGGGAAGTACACAGAGGAAGATGCAAAAGTTGTCCTTAGACAAATACTGGATGTGGTAGCCTTTTGCCATCTTCAGGGTGTCGTGCACCGTGATCTTAAACCTGAGAACTTCTTGTTCACATCCAAGGACGAGAACTCAATCCTGAAGACCATAGACTTTGGGTTGTCAGATTTTGTTAAACCAGATGAAAGACTTAATGATATTGTTGGCAGTGCATACTATGTGGCACCTGAAGTTCTACATAGAGCTTACAGTACAGAAGCTGATGTATGGAGTATTGGAGTGATTGCATATATTTTATTATGTGGCAGTCGTCCCTTTTGGGCCCGGACCGAGTCTGGAATCTTCCATGCTGTGGTAAAAGCTGATCCAAGTTTTGATGAACCTCCTTGGCCTTCTCTGTCAGATGAGGCAACAAATTTTGTTATGCGACTACTAAATAAAGATCCACGAAAAAGAATGTCTGCAGCACAGGCATTATGTCATCCATGGATTAAAAACAAGGATGTGAAAGTACCTCTGGATATTCTAATATTCAAGCTCATGAAAGCATACATGCGTTCCTCATCTCTACGGAAAGCGGCTTTAAGGGCTCTGTCCAAGACATTAACTGTGGATGAGCTATTTTATTTGAGGGAGCAGTTTTCACTTTTAAATCCAAGCAAAAATGGCTCCATTAGCTTGGAAAATATCACATCGGTCTTGATGCTGAGTGCAACAGATGCTATGAACGAGTCACGTGTGCCTGACTTTCTGATATCACTTAATGCATTACAATTTAGAAGGATGGATTTTGATGAGTTCTGTGCTGCTGCCCTTAGTGTTCATCAACTTGAAACACATGACCAGTGGGAGCAACGCGCACGTTATGCTTACGAACTTTTTGAAAAGGACGGAAACAAGGCCATACTCATTGACGAACTAGCTTCGGTGCTTGGGCTTGGTCCATCTGTCCCTGTTCATGCTGTTCTCCATGATTGGATTCGGCACACTGATGGAAAATTAAGTTTCATTGGGTTTGTCAAATTGTTGCATGGCCCATCTAGAAGTCTTGCAAAAGCTCAATAG 1770 0.4537 MGLCTSKPTLSSTQSATHSPTLHSQDVAVAVTHSHSAEPHLRSTDGESENPKEPENGKRSPFFPFYSPSPGRYVLPISPRRFFKRSFLSPSPAKHIRAALARRHGSVKPNEAAIPETEGFAGLNKTFGFSKHLGNKYEVGDEVGRGHFGYTCVAKVKKGEVKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALTTHKNLVQFYDAYEDHDNVYIVMELCEGGELLDRILSRGGKYTEEDAKVVLRQILDVVAFCHLQGVVHRDLKPENFLFTSKDENSILKTIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYSTEADVWSIGVIAYILLCGSRPFWARTESGIFHAVVKADPSFDEPPWPSLSDEATNFVMRLLNKDPRKRMSAAQALCHPWIKNKDVKVPLDILIFKLMKAYMRSSSLRKAALRALSKTLTVDELFYLREQFSLLNPSKNGSISLENITSVLMLSATDAMNESRVPDFLISLNALQFRRMDFDEFCAAALSVHQLETHDQWEQRARYAYELFEKDGNKAILIDELASVLGLGPSVPVHAVLHDWIRHTDGKLSFIGFVKLLHGPSRSLAKAQ* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0603 589 Gene3D Transferase(Phosphotransferase) domain 1 226 417 - -
Vra11g0603 589 Pfam Protein kinase domain 137 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0603 589 SUPERFAMILY Protein kinase-like (PK-like) 134 451 IPR011009 -
Vra11g0603 589 CDD STKc_CAMK 136 398 - -
Vra11g0603 589 SMART serkin_6 137 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0603 589 Gene3D - 418 507 - -
Vra11g0603 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Vra11g0603 589 Gene3D - 423 577 - -
Vra11g0603 589 MobiDBLite consensus disorder prediction 38 56 - -
Vra11g0603 589 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 44 584 - -
Vra11g0603 589 Gene3D Phosphorylase Kinase; domain 1 130 225 - -
Vra11g0603 589 ProSitePatterns Protein kinases ATP-binding region signature. 143 169 IPR017441 GO:0005524
Vra11g0603 589 SUPERFAMILY EF-hand 426 580 IPR011992 -
Vra11g0603 589 MobiDBLite consensus disorder prediction 1 31 - -
Vra11g0603 589 ProSiteProfiles Protein kinase domain profile. 137 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0603 589 PANTHER SERINE/THREONINE-PROTEIN KINASE 44 584 - -
Vra11g0603 589 MobiDBLite consensus disorder prediction 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0603 Vra-Chr11 4732317 4737535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0603 1 589 EF-hand Containing Proteins AT3G50530 69.735 0.0 883
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vra11g0603 Pkinase 1.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0603 K00924 - gmx:100794177 1011.52