Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0588 ATGTCGCAACGATCTGTGCCGGCACCGTTTTTGACCAAGACGTACGAGTTGGTGGATGATCCAGGGACGAACGAGGTGATATCGTGGAGTGACACTGGGAACACATTTGTTGTCTGGAAACATGCGGAATTTTCCAAGGATTTGCTTCCTAAATGTTTCAAGCACAATAACTTCTCCAGTTTTGTTCGCCAGCTCAACACCTACGGATTCCGAAAGATTGTGCCTGATAAATGGGAATTCGCAAACGAACATTTCAAGCGAGGGCACAAGGAGCTTCTCTGCGACATTAAACGCCGCAAGACCGTGCCGCAATTGCCTGCGCTTCCACCGGAGGCCGGAAAATCCAGCGGGGGTGGTAACTCTCCGTTAAACTCCGGCGGTGGAGATGACGCTGGGTCCACCTCTACCTCGTCCTCCTCCTCCGGTTCGAAGAACACGGGGTTGGTGGAAACAAACACAACAGCTTCTCATGAGTTATCGAGCGAGAACCAGAAACTGAAGAAGGATAACGAAACGCTGAGTTGCGAGCTGGCACGAGCGAGGAAGCAGTGCGATGAGCTCGTTGCTTTTCTCAAGAACCGTCTGATGGTGGGTCCTGATCAGATAGATCGCATCATGCGGCAAGGAAGTTGCGGATCTGAGAAGGCGGTAGGTGAAGAAGGTGGTGGGGAGTGTTTGAAACTGTTTGGTGTTTGGTTGAAAGAGGATACACTAGCAGACAAAAGAAACAACAACCACAAGAGAGCGCGCGAAGACCAGATGGGCTTCGGTGGGCCTCGCCTCAAGGAGTCCAAGCCCGTTGTTGACTTTGAACCTATAAATCTCATCATGACTAGCAATAAGGTTTGCAACTGA 855 0.5076 MSQRSVPAPFLTKTYELVDDPGTNEVISWSDTGNTFVVWKHAEFSKDLLPKCFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGHKELLCDIKRRKTVPQLPALPPEAGKSSGGGNSPLNSGGGDDAGSTSTSSSSSGSKNTGLVETNTTASHELSSENQKLKKDNETLSCELARARKQCDELVAFLKNRLMVGPDQIDRIMRQGSCGSEKAVGEEGGGECLKLFGVWLKEDTLADKRNNNHKRAREDQMGFGGPRLKESKPVVDFEPINLIMTSNKVCN* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0588 284 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 284 - -
Vra11g0588 284 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g0588 284 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g0588 284 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g0588 284 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g0588 284 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g0588 284 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g0588 284 Coils Coil 156 183 - -
Vra11g0588 284 MobiDBLite consensus disorder prediction 117 160 - -
Vra11g0588 284 MobiDBLite consensus disorder prediction 103 168 - -
Vra11g0588 284 Gene3D - 2 101 IPR036388 -
Vra11g0588 284 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 284 IPR027725 -
Vra11g0588 284 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0588 Vra-Chr11 4580279 4582479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0588 2 284 HSF AT4G36990 51.007 5.33e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra11g0588 HSF_DNA-bind 5.8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0588 K09419 - gmx:100791543 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0588 11 4580279 4582479 Vra7g1148 7 27510116 27513202 PCT