Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0580 ATGGACGTGGACATACTCAAAACTTCCACGAGTGATACCAGCATGGACATGATCATGATGATGCAAATGGAAAAGTTCCCGGAGTTATGTGAACCTTTTTATAACAACACCACTCCTCTCTACCCAGATAACGAGTTCTTAAACTCCACCACCACCACCACACTACCTGTGTTCTCCAACGTTAACCCAAACGTTATAACTCCACCACCCACTTTGATCAATCCACCGCCACCACCTTCCTCTAATTTTGTTCTCCAACAACCCATGACACCTCCTCTTCAACCCAACCCTTCGTTCTCCGAGAAGAAGAACTCCGTGGCTGCCATGAGGGAGATGATTTTCCGCGTAGCGGTGATGCAACCTATTCATATAGACCCTGAATCTATCAAGCCTCCCAAGAGAAGGAACGTGAAGATTTCGAAGGATCCGCAGAGTGTGGCAGCGAGGCACAGAAGGGAAAGGATTAGCGAGCGAATAAGGATCCTTCAGAGATTAGTTCCTGGTGGGACCAAAATGGACACGGCTTCTATGTTGGACGAAGCCATACACTACGTAAAGTTCTTGAAGAAACAAGTCCAGACGCTGGAACAAGCCGGAGCAAGTAGACCCTTGAGCGTTTTTGGCTTCCCTGGTACTGTGTCCAATGCCAATAATACCGTTAATTATTCTTCCTTCATGAAGAGTTGCCAACCGTGTCATATGCTGGGTTCTGCAGCTTCTAAACACATGCTGAGCTGA 738 0.4715 MDVDILKTSTSDTSMDMIMMMQMEKFPELCEPFYNNTTPLYPDNEFLNSTTTTTLPVFSNVNPNVITPPPTLINPPPPPSSNFVLQQPMTPPLQPNPSFSEKKNSVAAMREMIFRVAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRPLSVFGFPGTVSNANNTVNYSSFMKSCQPCHMLGSAASKHMLS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0580 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 198 IPR036638 GO:0046983
Vra11g0580 245 Coils Coil 178 198 - -
Vra11g0580 245 CDD bHLH_AtIND_like 140 196 - -
Vra11g0580 245 Pfam Helix-loop-helix DNA-binding domain 149 188 IPR011598 GO:0046983
Vra11g0580 245 PANTHER TRANSCRIPTION FACTOR HEC2 1 233 - -
Vra11g0580 245 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 233 IPR045843 GO:0003700|GO:0006355
Vra11g0580 245 Gene3D - 138 203 IPR036638 GO:0046983
Vra11g0580 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Vra11g0580 245 SMART finulus 145 194 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0580 Vra-Chr11 4499072 4500273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0580 23 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 59.016 2.03e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra11g0580 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0580 - - gmx:100796649 349.747