Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0578 ATGAACTGGGTTCGCGGAGAATCACTCGGCAGTGGAACCTTCGCCACCGTCAACGTCGTCGTCCCAGCAAACGGCTCCACTCGGTTCCCTTCTCCCGTCGCCGTCAAATCCTCTGATTCCGACAACGCGGGTTCGCTCCAACACGAAAAGGAGATACTCGATCGCCTTGGCTCTTCCCCTTACATCATCAAGTGTTTCGGCCACGATCACACCGTCGAGAACGGCGAGGAGTTCTACAACGTATTCCTCGAACGCGCCACCGAAGGGTCCCTCGCCGACCAGGTCAAGAAACACGGCGGAAGCCTCCCGGAGCCTTTCGTTCGGCGATGCACGAGGTCTATCGTGGAAGGGCTCAAACATATTCACGAGCACGGTTTCGTTCACTGCGACGTGAAGCTTCAGAACGTTCTCGTTTTCGACGGCGAGGTGAAAATCGCAGACTTCGGGCTCGCCAAGGAGAAGGGGGAGAAACAAGGGAAGTGCGAGTTCAGGGGAACGCCGTTGTTTATGTCGCCGGAATCAGTGAACGACAATGAATATGAGCCGCCGGCGGATATTTGGGCCCTGGGATGCGCCGTCGTGGAGATGGTGACCGGAAAACCCGCGTGGGATGTTAGCAATGATTCCAGTATTTGGAAATTGTTGATTCGGATTGGAGTGGGAGAAGAATTGCCAAAGATTCCAGAAGAATTGTCGAAAGAGGGGAAGGACTTTTTGGAGAAGTGCTTTGTTAAGGATCCCAAGAACAGATGGAGTGCTGAGATGCTTCTGAAGCACCCTTTCATCAAAGTTGACTCATTTTCGTTCGAGAAAGTTCATCAACCGTTACCGTCGCCGTCGCCGAGGACCCACTTCGATTTTCCTGACTGGGCTTCCACCACAATGGCTTCGGTCCCGTCCTCCCTGGATTCCGATGAGCACTCTGGGTGGTCGAGTTCTCCGGAGAGTCGTCTCCGGCCGCTTGTCACCGATAAGACACCGGAGAATTGGTCAGAATCGGATGGCTGGATCAGCGTTAGGTGA 1023 0.5435 MNWVRGESLGSGTFATVNVVVPANGSTRFPSPVAVKSSDSDNAGSLQHEKEILDRLGSSPYIIKCFGHDHTVENGEEFYNVFLERATEGSLADQVKKHGGSLPEPFVRRCTRSIVEGLKHIHEHGFVHCDVKLQNVLVFDGEVKIADFGLAKEKGEKQGKCEFRGTPLFMSPESVNDNEYEPPADIWALGCAVVEMVTGKPAWDVSNDSSIWKLLIRIGVGEELPKIPEELSKEGKDFLEKCFVKDPKNRWSAEMLLKHPFIKVDSFSFEKVHQPLPSPSPRTHFDFPDWASTTMASVPSSLDSDEHSGWSSSPESRLRPLVTDKTPENWSESDGWISVR* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0578 340 Gene3D Transferase(Phosphotransferase) domain 1 93 285 - -
Vra11g0578 340 MobiDBLite consensus disorder prediction 298 340 - -
Vra11g0578 340 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Vra11g0578 340 CDD STKc_MAPKKK 2 262 - -
Vra11g0578 340 ProSiteProfiles Protein kinase domain profile. 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0578 340 SMART serkin_6 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0578 340 Pfam Protein kinase domain 5 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0578 340 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Vra11g0578 340 MobiDBLite consensus disorder prediction 326 340 - -
Vra11g0578 340 SUPERFAMILY Protein kinase-like (PK-like) 3 309 IPR011009 -
Vra11g0578 340 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 303 - -
Vra11g0578 340 MobiDBLite consensus disorder prediction 298 319 - -
Vra11g0578 340 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 303 - -
Vra11g0578 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0578 Vra-Chr11 4481768 4483285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0578 1 340 MAP Kinase Kinase Kinase AT3G50310 52.408 4.73e-120 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vra11g0578 Pkinase 1.5e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0578 - - gmx:100782937 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0578 11 4481768 4483285 Vra7g1154 7 27620194 27621827 PCT