Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0577 ATGGCGGACAAGGAGCCAGTGAGCGGAAGGCGAAGGCCCAGGGGACCGGAGTCCACCGCCCGCAGCGAAGCGTTGGAGCGTCTCAAGGCTCGTCTCCGCGGTGGTCGTGGATCCGATGGCACTGGGCCCCAAATCAGGTTAGAAAACCCTGTCTACGACACTGTCCCCGAGGACGAGTACAATGCCCTCGTCGCAAAGCGCCGTGAACAGGCGCGCTCCTTTATAGTCGACGACGAAGGAATCGGATACGGCGACGAGGGCGAGGAAGAGGATTGGTCTCAGGCCGGATTCACTCTCTCCTCTGATGAATCCGAAGGCGAATCGGAAAGGCCGAAGCGGAAGAAGGTCGAGAAGAAGGATCCTCAGCCGAAACGGCCTTCTTCATCGCTCTCCGCCGCTGCGGCCATGATGGGAGGGCAGAAGTTGGCCTCCATGTTCACTTCCTCCGTTTTCAAGAAGAGTAGAGACGATAAAGTCTGCGAGAGCATTGTTGACGATGTTATCGCGGAGTTCGCTGCGGACGAGACTGATAGACTGAGGCGTAGAAGGGCGCAAGGGAATTCCTCTTCCATTTCTGACGCAAACAATGTTTTGCGTGTTAATACTGGGTTTAGGGATAAGCCTTCTGTTGGTATGATGCAAGATTCTTCTTCATTGCCGGAACATGGTAACCCTGAGTCTGTTAAGGTATTTGTTGAGAGTGATGGTTTTGACTCGGGGTTTGAGCCAAAGAGCGCGGTGGTTAGTGAAGTCCAAGATTTCGGGCGTGGTAGTTCTGAGAATGGGCAGACACCTACAGTGGTAGCCGATGATTCTCAAGTTAATGAATGTATGGTTGAGGCGAAAGAAGTGAAGAGTTTTGAAATTGCAGTGAAAGCGGATGCAAAGAAGGAGGTGTTCACTTTGAACGCGAAGGTTAAAGAAGAGGACGACACTGCATTGTCTGCTACTGCCGGTTGGAAGGAAACAATACGCGGTGCTGGTGGGGTTGATGTTGCTGATTCGAAGGATCCTTTAGAGTTTGATCTGGAGGAAGATGGATCACTGCCTTTCTACATCTTAGATGCTTATGAGGAGTTTTATGGGGAAAACAGGGGCACCATTTATCTCTTCGGGAAGGTTAAGACTGGGGATTTGTATCAGAGTTGTTGTGTTATTGTCAAGAGCATGCAGAGGTGTGTCTATGCAATTCCTAGCCGACCCTTGCTTCGCACTGAAGAGATGATGAGTCTCGATAGAGATCTCCAGGAGTCTCGAATTTCTTCTGCGGATTTCTTTAAAAAGTTGCAAGATGCAGTAGCTGATGTTAAGAATGAGATAGCACAACATCTGGTGAATTTGGATGTTTCGAACTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGATCGATTTGAAGTTCCTACAGGGGAAAATTATGTGGTGAAAATAAATTATTCATTCAAGGACCCTGTACTTCCAGCAGATCTCAAAGGCGAAAGTTTCTGTGCTCTCTTAGGAACTAGTTGCAGTGCCCTTGAGCTTTTCCTGATTAAACGGAAGATAAAGGGGCCTTCATGGCTACAGGTTTCAAAGTTTGCTACAAGCTCATCTTCCCGAAGGGTTAGCTGGTGCAAATTTGAAGTAACTGTTGACTCTCCTAAGCACATAAAGACATCAGCTCCTTCAAAAATCACTTATAATATTCCTCCAGTGGTTGTTGTAGCAATAAACTTGAAAACCACCATAAATGAAAAGCAGAACATAAATGAGATTGTATCAGCATCCGTTGTCTGTTGTAACATGGTTAAGATTGATGCCCCTATGATGGCTTCAGAGTGGAGGAGACCCGGAAGGCTGACCCATTTTACTGTTGTTCGTAAACTTGATGGGAGTATATTTCCAATGGGATTTAACAAGGAGGTTACGGACAGAAACTTAAAAGCTGGTTCAAATATTCTGTGTGCTGAAAGCAGTGAAAGAGCTTTGTTGAACCGCTTGATGTTAGAATTGCACAAGTTGGATTGCGATGTTCTGGTTGGACATAATATATCTGGATTTGACCTGGATGTTCTTTTCCACAGATTCCAGGCGTGCAAAGTGGCAAGCAGCATGTGGTCTAAACTAGGCCGCCTCAACCGATCGACTATGCCAAAACTTGGAAGAAGAAGTAAGGTTTTTGGTTCTGGAGCAGATCCTGGTATAATGTCATGCATTGCTGGCAGGCTTCTTTGTGATACATACTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTACTCTTTAAGTCACCTTGCAAAATCACACCTGAACAAGTTTCGGAAGGAAGTTGCTCCACATGAAGTTCCAAAAATGTTCCAGTCAGCAGAATCGCTAATGGAGCTTATTGAATACGGTGAAACAGATGCATGGTTGTCTATGGAACTGATGTTTTATTTAAGTATTCTTCCACTCACCCGTCAGCTGACTAATATAAGTGGTAATCTGTGGGGGAAAACCCTTCAGGGTGCTCGAGCACAGAGGGTTGAATATCTTTTGCTGCATACTTTCCATGCAGTGAAATATATGGTGCCAGACAAGTTCTCAAACTATTCCAAAGAAACGAAATTGACGAAACGTAGAGTAACCCACGATGCTGAAGATAGCAACTACGATGTAGATGTTGACGATGTAAACTATGACAATGATGCTTCTGAAGCTGATAATAAGAAAAGCAAAAAGGGTCCTTCTTATGCCGGTGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATACTGCTTCTGGATTTCAACAGTCTTTATCCTTCTATTATTCAGGAATACAATATTTGCTTTACAACTGTTGAAAGATCTTTGGATGGATCTTTTCCACGTCTACCATCTAGTAAAACAACTGGAGTCTTGCCAGAGGTGCTGAAAAATCTGGTAGATAGGAGGAAAAGGGTAAAGTCGTTGATAAAGAATGAAAAAAAGAAGAATGAAAAAGCTAATCCTATAAGGGTTCAGCAACTGGATATTCAGCAGCAAGCACTTAAGCTTACTGCTAACAGTATGTATGGGTGCCTGGGATTTTCCAATTCAAGATTTTATGCTAAGCCGTTGGCTGAGCTTATTACTTTACAAGGGAGGGAAATACTGCAGAGTACTGTTGATTTAGTTCAGAATGCCTTGAATTTAGAGGTGATCTATGGCGACACTGATTCAATAATGATTTACAGTGGGCTGGATGATATTGAGGAAGCTAATAAAATTGCTGTAAAAGTTATTCAAGAGGTCAATAAGAAATATAAATGTTTGGAAATTGATCTTGATGGTTTATATAAAAGAATGCTGCTTCTCAAGAAAAAGAAGTATGCAGCTGTAAAGTTGCTGTTTAAAGATGGCACCCCATATGAGGTGATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTAGCTAAAGAATTAGGAGATTTTTGCTTGACTCAAATTTTGTCTGGAGGGTCATGTGAAGATGTAGTGGAGTCAATCCACAACTCGCTCATGAAGGTACAAGAAGAAATGAGGAACGGACAAGTACCATTAGAGAAATATGTCATTACGAAGACATTGACTAAACCCCCGGAAGCTTATCCTGATGCCAAGAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACTCTTCTGGCTGTTCTGTTGGTGATACGATTCCGTATATAATTTGTTATGAACAGGGTGGCAGCTCAGGCAGTGCTGGTGGCATTGCTCAACGTGCTAGACATCCTGAAGAACTTAAACGGGAACAAGGGACATGGCTGATTGACATTGATTACTATTTATCACAACAGATCCATCCCGTAGTATCACGCCTTTGTGCATCGATTCAGGGAACAAGCCCAGAAAGACTGGCTGATTGCTTAGGGCTTGACTCCTCAAAGTTTCATCATAAATCAAGTGAAGCTTTTAATGATGATTCTAGCAGTTTACTCTTGTCTGCTGCTAATGATGAGGAGAGGTATAGGGGATGTGAGCCGTTGCTCTTGTCATGCCCCAGCTGCTCTGGTACATTCGACTGCCCACCCGTCTCTAAATCTATTTGCTGCTTGTTGGGAAGTGGAATGACAACCAGCGTATCCACCGAAGAATCTGATTTCAATTTCTGGCGAAAGATGTGTTGTCCTAAATGCCCCGAAGATGTCAAAATTTCTCCAGCGATGATAGCGAATCAGGTCAAAAGGCAAGCAGACATGTTTGTTTTGATGTACTATAAAGGTTTACTAACGTGTGATGATGAAACGTGTAAGCATACAACGCGAAGTATCAGCCTTCGGTTGGTTGGTGATTCCGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGTCGTCTGCTTAGAAAGTACACTGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCACGTGTTTGACACTGTTTCTTGTATAGAAAAGATGGAGGCCAAATCTAGAATGACTATAGAGAAAGAGGTGATAAAAATTAGGCCGATGGTTGATCCCGCAGCTTCAACAGCGCAGAAGATCAGGGACCGATGTGCCTTTGGTTGGGTGAGACTGGAGAATCTGGTCGTAACAGTTTAA 4620 0.4387 MADKEPVSGRRRPRGPESTARSEALERLKARLRGGRGSDGTGPQIRLENPVYDTVPEDEYNALVAKRREQARSFIVDDEGIGYGDEGEEEDWSQAGFTLSSDESEGESERPKRKKVEKKDPQPKRPSSSLSAAAAMMGGQKLASMFTSSVFKKSRDDKVCESIVDDVIAEFAADETDRLRRRRAQGNSSSISDANNVLRVNTGFRDKPSVGMMQDSSSLPEHGNPESVKVFVESDGFDSGFEPKSAVVSEVQDFGRGSSENGQTPTVVADDSQVNECMVEAKEVKSFEIAVKADAKKEVFTLNAKVKEEDDTALSATAGWKETIRGAGGVDVADSKDPLEFDLEEDGSLPFYILDAYEEFYGENRGTIYLFGKVKTGDLYQSCCVIVKSMQRCVYAIPSRPLLRTEEMMSLDRDLQESRISSADFFKKLQDAVADVKNEIAQHLVNLDVSNFSMAPVKRKYAFDRFEVPTGENYVVKINYSFKDPVLPADLKGESFCALLGTSCSALELFLIKRKIKGPSWLQVSKFATSSSSRRVSWCKFEVTVDSPKHIKTSAPSKITYNIPPVVVVAINLKTTINEKQNINEIVSASVVCCNMVKIDAPMMASEWRRPGRLTHFTVVRKLDGSIFPMGFNKEVTDRNLKAGSNILCAESSERALLNRLMLELHKLDCDVLVGHNISGFDLDVLFHRFQACKVASSMWSKLGRLNRSTMPKLGRRSKVFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLSHLAKSHLNKFRKEVAPHEVPKMFQSAESLMELIEYGETDAWLSMELMFYLSILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHTFHAVKYMVPDKFSNYSKETKLTKRRVTHDAEDSNYDVDVDDVNYDNDASEADNKKSKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSLDGSFPRLPSSKTTGVLPEVLKNLVDRRKRVKSLIKNEKKKNEKANPIRVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNALNLEVIYGDTDSIMIYSGLDDIEEANKIAVKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLLFKDGTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVPLEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGGSSGSAGGIAQRARHPEELKREQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFHHKSSEAFNDDSSSLLLSAANDEERYRGCEPLLLSCPSCSGTFDCPPVSKSICCLLGSGMTTSVSTEESDFNFWRKMCCPKCPEDVKISPAMIANQVKRQADMFVLMYYKGLLTCDDETCKHTTRSISLRLVGDSERGTVCPNYPRCNGRLLRKYTEADLYKQLSYFCHVFDTVSCIEKMEAKSRMTIEKEVIKIRPMVDPAASTAQKIRDRCAFGWVRLENLVVTV* 1540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0577 1539 Pfam DNA Polymerase alpha zinc finger 1331 1535 IPR015088 GO:0003887|GO:0006260
Vra11g0577 1539 SUPERFAMILY DNA/RNA polymerases 896 1308 IPR043502 -
Vra11g0577 1539 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 16 1538 - -
Vra11g0577 1539 MobiDBLite consensus disorder prediction 1 57 - -
Vra11g0577 1539 Gene3D Helix hairpin bin 968 1018 - -
Vra11g0577 1539 Pfam DNA polymerase family B 823 1292 IPR006134 GO:0000166|GO:0003677
Vra11g0577 1539 Gene3D - 391 517 - -
Vra11g0577 1539 Coils Coil 426 446 - -
Vra11g0577 1539 Gene3D - 564 880 IPR036397 GO:0003676
Vra11g0577 1539 MobiDBLite consensus disorder prediction 103 124 - -
Vra11g0577 1539 Pfam DNA polymerase alpha subunit p180 N terminal 25 92 IPR024647 -
Vra11g0577 1539 MobiDBLite consensus disorder prediction 880 905 - -
Vra11g0577 1539 ProSitePatterns DNA polymerase family B signature. 1060 1068 IPR017964 GO:0000166|GO:0003676
Vra11g0577 1539 Gene3D DNA Polymerase alpha, zinc finger 1331 1524 IPR038256 -
Vra11g0577 1539 TIGRFAM pol2: DNA polymerase (pol2) 51 1290 - -
Vra11g0577 1539 Coils Coil 1072 1106 - -
Vra11g0577 1539 CDD DNA_polB_alpha_exo 564 815 - -
Vra11g0577 1539 MobiDBLite consensus disorder prediction 74 136 - -
Vra11g0577 1539 SMART polmehr3 564 1072 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vra11g0577 1539 Pfam DNA polymerase family B, exonuclease domain 381 757 IPR006133 -
Vra11g0577 1539 Gene3D - 351 550 - -
Vra11g0577 1539 Gene3D - 1136 1323 IPR042087 -
Vra11g0577 1539 PRINTS DNA-directed DNA-polymerase family B signature 922 935 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vra11g0577 1539 PRINTS DNA-directed DNA-polymerase family B signature 1005 1017 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vra11g0577 1539 PRINTS DNA-directed DNA-polymerase family B signature 1058 1066 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vra11g0577 1539 Coils Coil 969 989 - -
Vra11g0577 1539 SUPERFAMILY Ribonuclease H-like 452 845 IPR012337 -
Vra11g0577 1539 Gene3D Palm domain of DNA polymerase 891 1121 IPR023211 -
Vra11g0577 1539 CDD POLBc_alpha 898 1308 IPR045846 GO:0003887|GO:1902975
Vra11g0577 1539 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0577 Vra-Chr11 4461061 4473069 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0577 2 1537 Core DNA Replication Machinery Family AT5G67100 60.358 0.0 1814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0577 K02320 - gmx:100798779 2553.09