Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0574 ATGGGCGACATGTACCACTTTGACAAGAATCTCTCTTCGCAGGACGAAATCTCACTTTTTCTGCGTCAGATTCTCCTCCGTTCATCTCCTTCTTCTTCTTCATCACCCCACTCCGTCCCCGGATCCTGCAACTCCAACGTCTCTCACCAAAACGTCAATTCTCACGCTTCTTTCACGCCGTCGCATCTCCAACACGCCAAGATCTCGAACCTTGGTTCCACCGCCTCTTTTCTCTCGCCTTCTGCCACTTGCGGTTCCTTCAAGGCCCAGACTGCTTCTGCTGCAAATGTGTCTTCTTCTTCTGTTTTAGTGAGCGAGAACGAGAATGATGACTATGATTGTGAAAGTGAGGAGGGTGTCGAAGCTTTGGCCGAGGAGCTTCCAACAAAGCCTGTTCCTTCAAGGAGTTCATCTAAGAGATCAAGAGCTGCAGAAGTTCATAATTTGTCTGAGAAGCGAAGAAGGAGTAGGATCAACGAGAAAATGAAGGCCTTGCAAAATCTAATTCCGAATTCTAACAAGACGGACAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAACTTCAGCTGCAAGTACAGATGCTGTCAATGAGAAATGGGTTGACTTTGCATCCTATGTGCTTTCCAGAAGGCTTACAGCCACTGCAGTTGTCTCAGATGGGCATGGAACTGAGTGAAAGAAACAGGTCTACCCCTTTAAACATGACAGCTACTCTGCCTCTCCACCAAGAGAACCCCTTGCACTACACATCCAATCTACCTAGCAAACACATTCTGCCAAATCAGCCATCTGCACCATATCCTTCATTTATTAACAACCCAGAAACTTCTTTTGGACTGGAATCCCGAATCCAATCAGAAACAAAACCTCTTCAACACAAAGGAGGATCTTCTGGGCCAATACGCGGGGAAGACATTTTGCATTACCAGCAGCAACCAAGTGCTATCCATTCAGATGCTAATACATTAGGTGGTTCTCAAGTTGTGAAAGAATTCGAGTCAGGCACAACAGTATCACTCTCTTTTGACACGCAAACATGTGAACCATGCATTGGCGGAAGAGAACAGTCAGGAGTGATCATAAGAAATAGTGAGGCCAACATTGTTGTTACATCGCAGTTAAGTAGGTAA 1140 0.4553 MGDMYHFDKNLSSQDEISLFLRQILLRSSPSSSSSPHSVPGSCNSNVSHQNVNSHASFTPSHLQHAKISNLGSTASFLSPSATCGSFKAQTASAANVSSSSVLVSENENDDYDCESEEGVEALAEELPTKPVPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLTLHPMCFPEGLQPLQLSQMGMELSERNRSTPLNMTATLPLHQENPLHYTSNLPSKHILPNQPSAPYPSFINNPETSFGLESRIQSETKPLQHKGGSSGPIRGEDILHYQQQPSAIHSDANTLGGSQVVKEFESGTTVSLSFDTQTCEPCIGGREQSGVIIRNSEANIVVTSQLSR* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0574 379 Pfam Helix-loop-helix DNA-binding domain 146 192 IPR011598 GO:0046983
Vra11g0574 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Vra11g0574 379 Gene3D - 137 201 IPR036638 GO:0046983
Vra11g0574 379 CDD bHLH_AtPIF_like 143 205 - -
Vra11g0574 379 MobiDBLite consensus disorder prediction 124 154 - -
Vra11g0574 379 PANTHER TRANSCRIPTION FACTOR SPATULA 12 321 - -
Vra11g0574 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 203 IPR036638 GO:0046983
Vra11g0574 379 SMART finulus 148 197 IPR011598 GO:0046983
Vra11g0574 379 MobiDBLite consensus disorder prediction 140 154 - -
Vra11g0574 379 Coils Coil 181 201 - -
Vra11g0574 379 MobiDBLite consensus disorder prediction 31 59 - -
Vra11g0574 379 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 321 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0574 Vra-Chr11 4442252 4445651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0574 5 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 45.541 1.14e-51 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra11g0574 HLH 4.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0574 - - var:108334706 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0574 11 4442252 4445651 Vra7g1159 7 27668029 27671981 PCT