Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0573 ATGACTATCACCAACGAAGAGCAACATCAAATTCAAATACCTTGCCACAAACAACTCCGTCACAAGAGTCTCCTTCAGAGCGATGCACTCTATCAGTATATACTTGAAACCAGTGTGTACCCAAGAGAGCACCAGAGCTTGAAGGAGCTACGTGAATTGACGGAAAAACACCCTTGGAACCTCTTAGCTACACCACCTGACGAAGGACAACTTCTAAGCATGTTACTGAAGGTGATCAATGCAAAGAACACCATGGAGATTGGCGTCTACACTGGTTACTCCTTGCTTTCCACTGCCCTCGCTCTTCCATCTGATGGAAAGATCCTGGCAATGGATATTAGCAGGGAATATTATGAACTGGGGTTGCCTGTGATTGAAAAGGCAGGAGTGGCTCACAAGATTGACTTCAGAGAAGGCCCAGCACTTCCTCTTCTTGATCAACTCATCAAAGACGAAAAGAACAAGGGAAGCTTCGATTTCATCTTCGTCGATGCTGATAAGGATAACTACTTGAACTATCACAATAGGGTGATTGAGCTTGTGAAGATTGGAGGAATGATCGCCTATGATAACACCCTGTGGAACGGCTCTGTGGCCGCAGCACCCGATGCTCCTCTCTTGGATTATATTAAGTATTATCGCGATTTTGTTATAGAGCTGAATCAAGCACTTGCACTTGATTCAAGGGTCGAGATTTGCCAGCTTCCCGTTGGAGACGGCATTACACTGTGCCGCCGCATCATCTGA 747 0.4578 MTITNEEQHQIQIPCHKQLRHKSLLQSDALYQYILETSVYPREHQSLKELRELTEKHPWNLLATPPDEGQLLSMLLKVINAKNTMEIGVYTGYSLLSTALALPSDGKILAMDISREYYELGLPVIEKAGVAHKIDFREGPALPLLDQLIKDEKNKGSFDFIFVDADKDNYLNYHNRVIELVKIGGMIAYDNTLWNGSVAAAPDAPLLDYIKYYRDFVIELNQALALDSRVEICQLPVGDGITLCRRII* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0573 248 CDD AdoMet_MTases 86 185 - -
Vra11g0573 248 PANTHER CAFFEOYL-COA 3-O-METHYLTRANSFERASE 4 248 - -
Vra11g0573 248 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 23 247 IPR002935 GO:0008171
Vra11g0573 248 PANTHER O-METHYLTRANSFERASE-RELATED 4 248 - -
Vra11g0573 248 Pfam O-methyltransferase 36 247 IPR002935 GO:0008171
Vra11g0573 248 Gene3D Vaccinia Virus protein VP39 12 248 IPR029063 -
Vra11g0573 248 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 246 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0573 Vra-Chr11 4423579 4424957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0573 6 247 Monolignol Biosynthesis Gene Families AT4G34050 75.207 3.71e-142 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0573 K00588 - gmx:100799303 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0573 11 4423579 4424957 Vra7g1164 7 27752894 27759681 PCT